PEC Original Annotations
|
Essentiality
|
Class
|
non-essential
|
References (PMID)
|
|
Deletion
|
OCR33,34-1
(D)
,
OCR33,34-2
(D)
,
OCR33,35-4 (AK4-2 / BK5-2)
(D)
|
Related gene (W3110 PEC)
|
Gene Search
|
Search MG1655 PEC by gene name:
tff
|
Related strains
|
Strains Search
|
Search strains by gene name:
tff
Search strains by all related name:
tff b4414 ECK0167 JWR0225 t44
|
General information (Go to Linear View:)
|
misc_RNA Name
|
tff
|
Alternative name
|
b4414,ECK0167,JWR0225,t44
|
Location, Length
|
189,712 - 189,847
(
+
)
;
4.09
min
;
136
(bp) ,
|
Product
|
novel sRNA, function unknown
|
Operon Name
|
tff-rpsB-tsf
|
Note
|
identified in a large scale screen
|
Function
|
|
Gene Ontology
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
Homology Analysis
|
BLAST
|
Bacteria
|
GTOP
|
|
PDB
(database updated :
2007.02.20
)
|
PSI-BLAST
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
BLAST
|
|
PSI-BLAST
|
|
nr
(database updated :
2007.02.20
)
|
BLAST
|
|
Pfam 28.0
(database updated :
2015-05
)
|
Pfam
|
|
PROSITE
|
PROSITE
|
|
Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 GCCACTGAAG GTTTTCTATA ATAGAAAATT
-070 CGACGTCTGA TGCTGTACAC AGCGCCAACA ATTATTGGTG TCCACGACGT ATTTGTGGTA TAAAGCGCGC
0001 cggacttccg atccatttcg tatacacaga ctggacggaa gcgacaatct cactttgtgt aacaacacac
0071 acgtatcggc acatattccg gggtgccctt tggggtcggt aatatgggat acgtggaggc ataaccCCAA
0141 CTTTTATATA GAGGTTTTAA TCATGGCAAC TGTTTCCATG CGCGACATGC TCAAGGCTGG TGTTCACTTC
0211 GGTCACCAGA CCCGTTACTG GAACCC
|