|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
J Bacteriol. 1989;171(6):3053-9.
Genetic reconstitution of the high-affinity L-arabinose transport system.
Horazdovsky BF, Hogg RW.
(
2656640
)
|
|
|
Deletion
|
LD3-32-1
(LD)
,
OCL79
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
araH
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
araH
Search strains by all related name:
araH araH_2 b1898 b1899 b4460 ECK1897 JW1887
|
General information (Go to Linear View: )
|
|
Gene Name
|
araH
|
|
Alternative name
|
araH_2,b1898,b1899,b4460,ECK1897,JW1887
|
|
Location, Length
|
1,980,578 - 1,981,564
(
-
)
;
42.69
min
;
987
(bp) ,
328
(aa)
|
|
Product
|
fused L-arabinose transporter subunits of ABC superfamily: membrane components
|
|
Operon Name
|
araFGH
|
|
Note
|
high-affinity L-arabinose transport protein (ABC superfamily, membrane); GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0016052 - carbohydrate catabolic process
|
|
Function
|
transport; Transport of small molecules: Carbohydrates, organic acids, alcohols,1.1.1 metabolism; carbon utilization; carbon compounds,4.3.A.1.m transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporter
|
|
Gene Ontology
|
GO:0005215
;
transporter activity ( araH )
GO:0005351
;
sugar:hydrogen ion symporter activity ( araH )
GO:0005886
;
plasma membrane ( araH )
GO:0006810
;
transport ( araH )
GO:0008643
;
carbohydrate transport ( araH )
GO:0016020
;
membrane ( araH )
GO:0016021
;
integral to membrane ( araH )
|
|
PID
|
145693152
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
ARAH_ECOLI
(
P08532
;
P76304; P76305
)
|
|
- Protein name
|
L-arabinose transport system permease protein araH.
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- Synonyms
|
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- Gene name
|
Name=araH; OrderedLocusNames=b1898/b1899, SF1945, S2038;
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Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
araH
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
L-arabinose transport system permease protein araH
|
|
PSI-BLAST
|
Ribose transport system permease protein rbsC
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
L-arabinose transport system permease protein [Shigella flexneri 2a str. 301]
|
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Pfam 28.0
(database updated :
2015-05
)
|
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Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
GLYCOSAMINOGLYCAN
PKC_PHOSPHO_SITE
MYRISTYL
PROKAR_LIPOPROTEIN
|
|
MMBR References
|
J Mol Biol. 1987;197(1):37-46.
High-affinity L-arabinose transport operon. Nucleotide sequence and analysis of gene products.
Scripture JB, Voelker C, Miller S, O'Donnell RT, Polgar L, Rade J, Horazdovsky BF, Hogg RW.
(
2445996
)
|
| Sequences |
Amino acid
FASTA format
|
0001 MSSVSTSGSG APKSSFSFGR IWDQYGMLVV FAVLFIACAI FVPNFATFIN MKGLGLAISM SGMVACGMLF
0071 CLASGDFDLS VASVIACAGV TTAVVINLTE SLWIGVAAGL LLGVLCGLVN GFVIAKLKIN ALITTLATMQ
0141 IVRGLAYIIS DGKAVGIEDE SFFALGYANW FGLPAPIWLT VACLIIFGLL LNKTTFGRNT LAIGGNEEAA
0211 RLAGVPVVRT KIIIFVLSGL VSAIAGIILA SRMTSGQPMT SIGYELIVIS ACVLGGVSLK GGIGKISYVV
0281 AGILILGTVE NAMNLLNISP FAQYVVRGLI LLAAVIFDRY KQKAKRTV
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 tcgccggtga attgttacac gagcaggcag
-070 atgagcgtca ggcactgagc cttgcgatgc ctaaagtcag ccaggctgtt gcctgagtaa ggagagtatg
0001 atgtcttctg tttctacatc ggggtctggc gcacctaagt cgtcattcag cttcgggcgt atctgggatc
0071 agtacggcat gctggtggtg tttgcggtgc tctttatcgc ctgtgccatt tttgtcccaa attttgccac
0141 cttcattaat atgaaagggt tgggcctggc aatttccatg tcggggatgg tggcttgtgg catgttgttc
0211 tgcctcgctt ccggtgactt tgacctttct gtcgcctccg taattgcctg tgcgggtgtc accacggcgg
0281 tggttattaa cctgactgaa agcctgtgga ttggcgtggc agcggggttg ttgctgggcg ttctctgtgg
0351 cctggtcaat ggctttgtta tcgccaaact gaaaataaat gctctgatca cgacattggc aacgatgcag
0421 attgttcgag gtctggcgta catcatttca gacggtaaag cggtcggtat cgaagatgaa agcttctttg
0491 cccttggtta cgccaactgg ttcggtctgc ctgcgccaat ctggctcacc gtcgcgtgtc tgattatctt
0561 tggtttgctg ctgaataaaa ccacctttgg tcgtaacacc ctggcgattg gcgggaacga agaggccgcg
0631 cgtctggcgg gtgtaccggt tgttcgcacc aaaattatta tctttgttct ctcaggcctg gtatcagcga
0701 tagccggaat tattctggct tcacgtatga ccagtgggca gccaatgacg tcgattggtt atgagctgat
0771 tgttatctcc gcctgcgttt taggtggcgt ttctctgaaa ggtggcatcg gaaaaatctc atatgtggtg
0841 gcgggtatct taattttagg caccgtggaa aacgccatga acctgcttaa tatttctcct ttcgcgcagt
0911 acgtggttcg cggcttaatc ctgctggcag cggtgatctt cgaccgttac aagcaaaaag cgaaacgcac
0981 tgtctgatgc ttttttctgc aacaatttag cgttttttcc caccatagcc aaccgccata acggttggct
1051 gttcttcgtt gcaaatggcg acccccgtca cactgtc
|
