|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
|
|
|
Deletion
|
2-1
(LD)
,
OCL10
(D)
,
OCL10,16-3 (LD 2-1'_CRS)
(D)
,
OCL10,16-4 (LD 2-1'_P/O)
(D)
,
OCL13
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
proK
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
proK
Search strains by all related name:
proK b3545 ECK3532 JWR0080 proV
|
General information (Go to Linear View: )
|
|
tRNA Name
|
proK
|
|
Alternative name
|
b3545,ECK3532,JWR0080,proV
|
|
Location, Length
|
3,706,639 - 3,706,715
(
-
)
;
79.89
min
;
77
(bp) ,
|
|
Product
|
tRNA-Pro
|
|
Operon Name
|
proK
|
|
Note
|
anticodon: CGG; proline tRNA1
|
|
Function
|
|
|
Gene Ontology
|
GO:0000166
;
nucleotide binding ( proV )
GO:0005515
;
protein binding ( proV )
GO:0005524
;
ATP binding ( proV )
GO:0005886
;
plasma membrane ( proV )
GO:0006810
;
transport ( proV )
GO:0006865
;
amino acid transport ( proV )
GO:0015171
;
amino acid transmembrane transporter activity ( proV )
GO:0016020
;
membrane ( proV )
GO:0016887
;
ATPase activity ( proV )
GO:0017111
;
nucleoside-triphosphatase activity ( proV )
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
proV
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
|
MMBR References
|
Microbiol. Rev. 1985;49:379-397.
Structure and organization of the transfer ribonucleic acid genes of Escherichia coli K-12.
Fournier, M. J., and H. Ozeki.
|
J Mol Biol. 1990;212(4):579-98.
Genomic organization and physical mapping of the transfer RNA genes in Escherichia coli K12.
Komine Y, Adachi T, Inokuchi H, Ozeki H.
(
2184240
)
|
Nucleic Acids Res. 1985;13:3213-3220
Structure and transcription of the tRNA1Pro gene from Escherichia coli.
Kuchino, Y., F. Mori, and S. Nishimura.
|
Nucleic Acids Res. 1994;22:2576-2586
Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes.
Sofia, H. J., V. D. Burland, D. L. Daniels, G. Plunkett, and F. R. Blattner.
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 gctaactaag cggcctgctg actttctcgc
-070 cgatcaaaag gcattttgct attaagggat tgacgagggc gtatctgcgc agtaagatgc gccccgcatt
0001 cggtgattgg cgcagcctgg tagcgcactt cgttcgggac gaaggggtcg gaggttcgaa tcctctatca
0071 ccgaccaaat tcgaaaagcc tgctcaacga gcaggctttt ttgcatctgc agctcatgag gatgagaacc
0141 tccgggggca gggaggttcg actcgagcga agcgaga
|
