Strain No	NED4002
Deleted Genes	pdp-rocR Show All [pdp, nupC, deoC, deoR, yxxB, yxeR, yxeQ, yxeP, yxeO, yxeN, yxeM, yxeL, yxeK, yxeJ, yxeI, yxeH, yxeG, yxeF, yxeE, yxeD, yxeC, yxeB, yxeA, yxdM, yxdL, yxdK, yxdJ, iolJ, iolI, iolH, iolG, iolF, iolE, iolD, iolC, iolB, mmsA, iolR, iolS, yxcE, yxcD, csbC, htpG, yxcA, yxbG, yxbF, aldX, yxbD, yxbC, yxbB, aslA, yxnB, asnH, yxaM, yxaL, yxaJ, yxaI, yxaH, qodI, yxaF, yxnA, yxaD, yxzK, yxaC, yxaB, glxK, gntR, gntK, gntP, gntZ, ahpC, ahpF, bglA, yyzE, yydK, yyzN, yydJ, yydI, yydH, yydG, yydF, fbp, yydD, yydC, yydB, yydA, yyzF, yycS, yycR, yyzG, yycQ, yycP, yycO, yycN, rapG, phrG, argI, rocE, rocD, rocR]
Marker Gene	Cm
Deletion Length	98081
Memo
Genome Map	Reference Genome: Bacillus subtilis subsp. subtilis str. 168 (Accession No. NC_000964)
Reference	Morimoto T, Kadoya R, Endo K, Tohata M, Sawada K, Liu S, Ozawa T, Kodama T, Kakeshita H, Kageyama Y, Manabe K, Kanaya S, Ara K, Ozaki K, Ogasawara N. Enhanced recombinant protein productivity by genome reduction in Bacillus subtilis. DNA Res (2008) 15(2) 73-81 [PubMed ID = 18334513] [RRC reference]
Related Pathways Updated:2023/08/29	bsu00010 Glycolysis / Gluconeogenesis bsu00030 Pentose phosphate pathway bsu00051 Fructose and mannose metabolism bsu00053 Ascorbate and aldarate metabolism bsu00071 Fatty acid degradation bsu00220 Arginine biosynthesis bsu00240 Pyrimidine metabolism bsu00250 Alanine, aspartate and glutamate metabolism bsu00260 Glycine, serine and threonine metabolism bsu00280 Valine, leucine and isoleucine degradation bsu00310 Lysine degradation bsu00311 Penicillin and cephalosporin biosynthesis bsu00330 Arginine and proline metabolism bsu00340 Histidine metabolism bsu00380 Tryptophan metabolism bsu00410 beta-Alanine metabolism bsu00480 Glutathione metabolism bsu00500 Starch and sucrose metabolism bsu00520 Amino sugar and nucleotide sugar metabolism bsu00521 Streptomycin biosynthesis bsu00561 Glycerolipid metabolism bsu00562 Inositol phosphate metabolism bsu00620 Pyruvate metabolism bsu00625 Chloroalkane and chloroalkene degradation bsu00630 Glyoxylate and dicarboxylate metabolism bsu00640 Propanoate metabolism bsu00680 Methane metabolism bsu00770 Pantothenate and CoA biosynthesis bsu01100 Metabolic pathways bsu01110 Biosynthesis of secondary metabolites bsu01120 Microbial metabolism in diverse environments bsu01200 Carbon metabolism bsu01230 Biosynthesis of amino acids bsu01232 Nucleotide metabolism bsu01240 Biosynthesis of cofactors bsu02010 ABC transporters bsu02020 Two-component system bsu02024 Quorum sensing bsu02060 Phosphotransferase system (PTS)
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Single Region Deletion - Detail