mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000964 | 2,579,560 | 0 | G | T | 56.5% | 1.3 / 22.9 | 23 | A53E (GCA→GAA) ‡ | pstA | phosphate ABC transporter (permease) |
| * | NC_000964 | 3,788,210 | 0 | T | C | 54.5% | ‑0.1 / 66.1 | 44 | intergenic (‑207/+216) | atpI/upp | ATP synthase (subunit i)/uracil phosphoribosyltransferase |
| * | NC_000964 | 2,579,550 | 0 | T | G | 50.0% | 3.4 / 16.8 | 22 | G56G (GGA→GGC) ‡ | pstA | phosphate ABC transporter (permease) |
| * | NC_000964 | 2,579,554 | 0 | C | T | 50.0% | ‑4.0 / 22.5 | 22 | G55E (GGA→GAA) | pstA | phosphate ABC transporter (permease) |
| * | NC_000964 | 2,579,556 | 0 | A | T | 47.8% | ‑1.1 / 25.3 | 23 | A54A (GCT→GCA) | pstA | phosphate ABC transporter (permease) |
| * | NC_000964 | 2,579,565 | 0 | G | A | 47.8% | ‑0.2 / 22.2 | 24 | A51A (GCC→GCT) ‡ | pstA | phosphate ABC transporter (permease) |
| * | NC_000964 | 2,579,566 | 0 | G | A | 47.8% | 0.6 / 21.2 | 23 | A51V (GCC→GTC) ‡ | pstA | phosphate ABC transporter (permease) |
| * | NC_000964 | 2,579,568 | 0 | G | A | 47.8% | 4.9 / 11.4 | 23 | S50S (AGC→AGT) | pstA | phosphate ABC transporter (permease) |
| * | NC_000964 | 2,579,561 | 0 | C | G | 47.6% | 0.0 / 26.1 | 23 | A53P (GCA→CCA) ‡ | pstA | phosphate ABC transporter (permease) |
| * | NC_000964 | 3,788,292 | 0 | T | C | 45.8% | 8.8 / 67.0 | 48 | intergenic (‑289/+134) | atpI/upp | ATP synthase (subunit i)/uracil phosphoribosyltransferase |
| * | NC_000964 | 3,847,273 | 0 | C | T | 45.5% | 8.8 / 16.1 | 22 | intergenic (+24/‑75) | phrF/ywhH | secreted regulator of the activity of phosphatase RapF/putative tRNA editing enzyme |
| * | NC_000964 | 2,579,551 | 0 | C | T | 45.0% | ‑5.5 / 17.7 | 22 | G56E (GGA→GAA) ‡ | pstA | phosphate ABC transporter (permease) |
| * | NC_000964 | 3,788,769 | 0 | T | C | 41.7% | 17.5 / 59.8 | 48 | K96R (AAA→AGA) | upp | uracil phosphoribosyltransferase |
| * | NC_000964 | 1,778,395 | 0 | T | G | 36.8% | 36.5 / 11.3 | 38 | V20G (GTT→GGT) | mutL | DNA mismatch repair endonuclease |
| * | NC_000964 | 2,579,564 | 0 | T | A | 34.8% | 11.0 / 16.7 | 23 | I52F (ATT→TTT) | pstA | phosphate ABC transporter (permease) |
| * | NC_000964 | 1,143,719 | 0 | A | G | 32.4% | 45.0 / 12.1 | 37 | D48G (GAT→GGT) | sbcD | DNA repair exonuclease |
| * | NC_000964 | 1,246,991 | 0 | T | G | 32.0% | 95.2 / 13.0 | 51 | V52G (GTG→GGG) | thiD | phosphomethylpyrimidine kinase, 4‑amino‑5‑hydroxymethyl‑2‑methylpyrimidine and 4‑amino‑5‑hydroxymethyl‑2‑methylpyrimidine pyrophosphate kinase |
| * | NC_000964 | 3,789,097 | 0 | C | T | 29.3% | 83.0 / 49.1 | 58 | intergenic (‑42/+93) | upp/glyA | uracil phosphoribosyltransferase/serine hydroxymethyltransferase |
| * | NC_000964 | 1,154,631 | 2 | . | T | 20.5% | 95.5 / 33.7 | 39 | coding (843/2685 nt) | wprA | cell wall‑associated protease |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000964 | = 11284 | NA (NA) | 3 (0.080) | 3/476 | 3.4 | NA | noncoding (1475/1555 nt) | rrnO‑16S | ribosomal RNA‑16S |
| ? | NC_000964 | = 11341 | NA (NA) | noncoding (1532/1555 nt) | rrnO‑16S | ribosomal RNA‑16S | |||||