| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000964 | 1,177,136 | G→A | L40F (CTT→TTT) | yitG ← | putative efflux transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000964 | 1,177,136 | 0 | G | A | 95.2% | 76.1 / ‑5.2 | 21 | L40F (CTT→TTT) | yitG | putative efflux transporter |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (9/11); minor base C (1/0); total (10/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.76e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01 | |||||||||||
GGCCGGTTCCGGCTGCCCCGATTCCCTGTAACGCTCGTCCTGCCATGACCCAAGGATAGGCATTGTCAAAAAAACCTGCCGCAAACCCGGCTAACAAACCGCCGGCACCATACAAAATTAAGCAGGGAATAATGATGACTTTCCTTGAGAATCGGTCTGCGAGATAACCGACAATCGGAATCGCAAATGCTGCAATCAAGGAAAATACTGTGATCACGAGACTGACTTGAAATTGTGATAAATGAAGTTCAGATTTCATTTTTGGCAAAATCGGAATAAGCATCGAGTTTCCTAGGGTTAATATTAAAGGGATTGAACCGATTGCCACAATCGTCATTCCGTTATTTTGTTTTGATGATTCCATCTCAGAGCACACTCCTTTTCTTCTGCTTAGAATGTCCCTGATGGCTTCGTTTATTCAGCGATCAGACAGCAAAAAACCGAACAGAAGATACCTGTTCGGGAAAAAAGAGGGTTAACCGAGAGCCTGT > NC_000964/1176890‑1177380 | ggcggtttCCGGCTCCCCCGATCCCCTGTAACGCTCGTCCTGCCATGACCCAAGGGTAGGCATTTTCAAAAAACCCTGCCGCAAACCCGGCTAACAAACCGCCGGCACCATACAAAATTAAGCAGGGAATAATGATGACTTTCCTTGAGAATCGGTCTGCGAGATAACCGACAATCGGAATCGCAAATGCTGCAATCAAGGAAAATACTGTGATCACGAGACTGACTTGAAATTGTGATAAATGAAATTCa < 1:186655/245‑1 (MQ=255) ccGGCTGCCCCGATTCCCTGTAACGCTCGTCCTGCCATGACCCAAGGGTAGGCATTGTCAAAAAAACCTGCCGCACACCCGGCTAACAAACCGACGGCACCATACAAAATTAAGCAGGGAATAATGATGACTTTCCTTGAGAATCGGTCTGCGAGATAACCGACAATCGGAATCGCAAATGCTGCAATCAAGGAAAATACTGTGATCACGAGACTGACTTGAAATTGTGATAAATGAACTTCAGATTTCAt > 1:323786/1‑251 (MQ=255) cGCTCGTCCTGCCATGACCCAAGGGTAGGCATTGTCAAAAAAACCTGCCGCAAACCCGGCTAACAAACCGCCGGCACCATACAAAATTAAGCAGGGAATAATGATGACTTTCCTTGAGAATCGGTCTGCGAGATAACCGACAATCGGAATCGCAAATGCTGCAATCAAGGAAAATACTGTGATCACGAGACTGACTTGAAATTGTGATAAATGAAATTCAGATTTCATTTTTGGCAAAATCGGAATAAGc > 1:327849/1‑250 (MQ=255) gtaaaaaaaaCCTGCCGAAAACCCGGCTAACAAACCGCCGGCACCATACAAAATTAAGCAGGGAATAATGATGACTTTCCTTGAGAATCGGTCTGCGAGATAACCGACAATCGGAATCGCAAATGCTGCAATCAAGGAAAATACTGTGATCACGAGACTGACTTGAAATTGTGATAAATGAAATTCAGATTTCATTTTTGGCAAAATCGGAATAAGCATCGAGTTTCCTAGGGTTAATATTAAAGGGAtt < 2:273609/247‑1 (MQ=255) aaaacCCTGCCGCAAACCCGGCTAACAAACCGCCGGCACCATACAAAATTAAGCAGGGAATAATGATGACTTTCCTTGAGAATCGGTCTGCGAGATAACCGACAATCGGAATCGCAAATGCTGCAATCAAGGAAAATACTGTGATCACGAGACTGACTTGAAATTGTGATAAATGAAATTCAGATTTCATTTTTGGCAAAATCGGAATAAGCATCGAGTTTCCTAGGGTTAATATTAAAGGGATTGAACCg < 1:326667/251‑1 (MQ=255) aaaCCTGCCGCAAACCCGGCTAACAAACCGCCGGCACCATACAAAATTAAGCAGGGAATAATGATGACTTTCCTTGAGAATCGGTCTGCGAGATAACCGACAATCGGAATCGCAAATGCTGCAATCAAGGAAAATACTGTGATCACGAGACTGACTTGAAATTGTGATAAATGAAATTCAGATTTCATTTTTGGCAAAATCGGAATAAGCATCGAGTTTCCTAGGGTTAATATTAAAGGGATTGAACCGAt > 1:222593/1‑251 (MQ=255) ggCCGCAAACCCGGCTAACAAACCGCCGGCACCATACAAAATTAAGCAGGGAATAATGATGACTTTCCTTGAGAATCGGTCTGCGAGATAACCGACAATCGGAATCGCAAATGCTGCAATCAAGGAAAATACTGTGATCACGAGACTGACTTGAAATTGTGATAAATGAAATTCAGATTTCATTTTTGGCAAAATCGGAATAAGCATCGAGTTTCCTAGGGTTAATATTAAAGGGATTGAACCGATTGCca < 1:181753/250‑1 (MQ=255) cAAACCCGGCTAACAAACCGCCGGCACCATACAAAATTAAGCAGGGAATAATGATGACTTTCCTTGAGAATCGGTCTGCGAGATAACCGACAATCGGAATCGCAAATGCTGCAATCAAGGAAAATACTGTGATCACGAGACTGACTTGAAATTGTGATAAATGAAATTCAGATTTCATTTTTGGCAAAATCGGAATAAGCATCGAGTTTCCTAGGGTTAATATTAAAGGGATTGAACCGATTGCCACAATc < 1:44603/251‑1 (MQ=255) aaaCCGCCGGCACCATACAAAATTAAGCAGGGAATAATGATGACTTTCCTTGAGAATCGGTCTGCGAGATAACCGACAATCGGAATCGCAAATGCTGCAATCAAGGAAAATACTGTGATCACGAGACTGACTTGAAATTGTGATAAATGAAATTCAGATTTCATTTTTGGCAAAATCGGAATAAGCATCGAGTTTCCTAGGGTTAATATTAAAGGGATTGACCCGATTGCCACAATCGTCATTCCGTTAtt < 2:166876/251‑1 (MQ=255) ccgGCACCATACAAAATTAAGCAGGGAATAATGATGACTTTCCTTGAGAATCGGTCTGCGAGATAACCGACAATCGGAATCGCAAATGCTGCAATCAAGGAAAATACTGTGATCACGAGACTGACTTGAAATTGTGATAAATGAAATTCAGATTTCATTTTTGGCAAAATCGGAATAAGCATCGAGTTTCCTAGGGTTAATATTAAAGGGATTGAACCGATTGCCACAATCGTCATTCCGTTAttttgttt < 2:101764/251‑1 (MQ=255) ggCACCATACAAAATTAAGCAGGGAATAATGATGACTTTCCTTGAGAATCGGGCTGCTAGATAACCGACAATCTGAATCGCAAATGCTGCAATCAAGGAAAATACTGTGATCACGAGACTTACTGGAAATTGTGATAAATGAAATTCAGATGTCATTTTTGGCAAAATCGGAATAAGCATCGAGTTTCCTAGGGTTAATATTAAATGGATTGAACCGATTGCCACAATCGTCATTCCGTTAttttgttttg < 2:323786/251‑1 (MQ=255) aaGCAGGGAATAATGATGACTTTCCTTGAGAATCGGTCTGCGAGATAACCGACAATCGGAATCGCAAATGCTGCAATCAAGGAAAATACTGTGATCACGAGACTGACTTGAAATTGTGATAAATGAAATTCAGATTTCATTTTTGGCAAAATCGGAATAAGCATCGAGTTTCCTAGGGTTAATATTAAAGGGATTGAACCGATTGCCACAATCGTCATTCCGTTATTTTGTTTTGATGATTCCAtctc > 2:59709/1‑248 (MQ=255) aGCAGGGAATAATGATGACTTTCCTTGAGAATCGGTCTGCGAGATAACCGACAATCGGAATCGCAAATGCTGCAATCAAGGAAAATACTGTGATCACGAGACTGACTTGAAATTGTGATAAATGAAATTCAGATTTCATTTTTGGCAAAATCGGAATAAGCATCGAGTTTCCTAGGGTTAATATTAAAGGGATTGAACCGATTGCCACAATCGTCATTCCGTTATTTTGTTTTGATGATTCCATCTCagag < 1:17912/251‑1 (MQ=255) gaCTTTCCTTGAGAATCGGTCTGCGAGATAACCGACAATCGGAATCGCAAATGCTGCAATCAAGGAAAATACTGTGATCACGAGACTGACTTGAAATTGTGATAAATGAAATTCAGATTTCATTTTTGGCAAAATCGGAATAAGCATCGAGTTTCCTAGGGTTAATATTAAAGGGATTGAACCGATTGCCACAATCGTCATTCCGTTATTTTGTTTTGATGATTCCATCTCAGAGCACACTCCTTttcttc > 1:25089/1‑251 (MQ=255) aTCGGTCTGCGAGATAACCGCCAATCGGAATCGCAAATGCTGCAATCAAGGAAAATACTGTGATCACGAGACTGACTTGAAATTGTGATAAATGAAATTCAGATTTCATTTTTGGCAAAATCGGAATAAGCATCGAGTTTCCTAGGGTTAATATTAAAGGGATTGAACCGATTGCCACAATCGTCATTCCGTTATTTTGTTTTGATGATTCCATCTCAGAGCACACTCCTTTTCTTCTGCTTAGAATGTcc > 2:53446/1‑251 (MQ=255) aaCCGACAATCGGAATCGCAAATGCTGCAATCAAGGAAAATACTGTGATCACGAGCCTGACTTGAAATTGTGATAAATGAAATTCAGATTTCATTTTTGGCAAAATCGGAATAAGCATCGAGTTTCCTAGGGTTAATATTAAAGGGATTGAACCGATTGCCACAATCGTCATTCCGTTATTTTGTTTTGATGATTCCATCTCAGAGCACACTCCTTTTCTTCTGCTTAGAATGTCCCTGATGGCTTCGttt > 1:116785/1‑251 (MQ=255) ggAATCGCAAATGCTGCAATCAAGGAAAATACTGTGATCACGAGACTGACTTGAAATTGTGATAAATGAAATTCAGATTTCATTTTTGGCAAAATCGGAATAAGCATCGAGTTTCCTAGGGTTAATATTAAAGGGATTGAACCGATTGCCACAATCGTCATTCCGTTATTTTGTTTTGATGATTCCATCTCAGAGCACACTCCTTTTCTTCTGCTTAGAATGTCCCTGATGGCTTCGTTTATTCAGCGATc > 1:194988/1‑251 (MQ=255) aTGCTGCAATCAAGGAAAATACTGTGATCACGAGACTGACTTGAAATTGTGATAAATGAAATTCAGATTTCATTTTTGGCAAAATCGGAATAAGCATCGAGTTTCCTAGGGTTAATATTAAAGGGATTGAACCGATTGCCACAATCGTCATTCCGTTATTTTGTTTTGATGATTCCATCTCAGAGCACACTCCTTTTCTTCTGCTTAGAATGTCCCTGATGGCTTCGTTTATTCAGCGATCAGACAGCaaa < 1:59709/251‑1 (MQ=255) aaGGAAAATACTGTGATCACGAGACTGACTTGAAATTGTGATAAATGAAATTCAGATTTCATTTTTGGCAAAATCGGAATAAGCATCGAGTTTCCTAGGGTTAATATTAAAGGGATTGAACCGATTGCCACAATCGTCATTCCGTTATTTTGTTTTGATGATTCCATCTCAGAGCACACTCCTTTTCTTCTGCTTAGAATGTCCCTGATGGCTTCGTTTATTCAGCGATCAGACAGCAAAAAACCGAAc > 1:264021/1‑249 (MQ=255) agaCTGACTTGAAATTGTGATAAATGAAATTCAGATTTCATTTTTGGCAAAATCGGAATAAGCATCGAGTTTCCTAGGGTTAATATTAAAGGGATTGAACCGATTGCCACAATCGTCATTCCGTTATTTTGTTTTGATGATTCCATCTCAGAGCACACTCCTTTTCTTCTGCTTAGAATGTCCCTGATGGCTTCGTTTATTCAGCGATCAGACAGCAAAAAACCGAACAGAAGATACCTGTTCGGGaaaaa < 1:161478/251‑1 (MQ=255) aaTGAAATTCAGATTTCATTTTTGGCAAAATCGGAATAAGCATCGAGTTTCCTAGGGTTAATATTAAAGGGATTGAACCGATTGCCACAATCGTCATTCCGTTATTTTGTTTTGATGATTCCATCTCAGAGCACACTCCTTTTCTTCTGCTTAGAATGTCCCTGATGGCTTCGTTTATTCAGCGATCAGACAGCAAAAAACCGAACAGAAGATACCTGTTCGGGAAAAAAGAgggcgcattaaagcttatc > 1:149607/1‑235 (MQ=255) | GGCCGGTTCCGGCTGCCCCGATTCCCTGTAACGCTCGTCCTGCCATGACCCAAGGATAGGCATTGTCAAAAAAACCTGCCGCAAACCCGGCTAACAAACCGCCGGCACCATACAAAATTAAGCAGGGAATAATGATGACTTTCCTTGAGAATCGGTCTGCGAGATAACCGACAATCGGAATCGCAAATGCTGCAATCAAGGAAAATACTGTGATCACGAGACTGACTTGAAATTGTGATAAATGAAGTTCAGATTTCATTTTTGGCAAAATCGGAATAAGCATCGAGTTTCCTAGGGTTAATATTAAAGGGATTGAACCGATTGCCACAATCGTCATTCCGTTATTTTGTTTTGATGATTCCATCTCAGAGCACACTCCTTTTCTTCTGCTTAGAATGTCCCTGATGGCTTCGTTTATTCAGCGATCAGACAGCAAAAAACCGAACAGAAGATACCTGTTCGGGAAAAAAGAGGGTTAACCGAGAGCCTGT > NC_000964/1176890‑1177380 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |