| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000964 | 1,176,945 | A→G | Y103Y (TAT→TAC) | yitG ← | putative efflux transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000964 | 1,176,945 | 0 | A | G | 95.0% | 54.4 / ‑5.4 | 20 | Y103Y (TAT→TAC) | yitG | putative efflux transporter |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (13/6); minor base C (1/0); total (14/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGTCAGTACGATCGAAATGATACAAAACACAGGAAAGGCAAAAAACGCGCCATACCAGACAAGCAGGGCGATCAGCGAGCCAATGATCGGCGATAGCACTTTCCCCATGCCGTTTGAAGCTTCAACAAGGCCGAGCACCTTGCTCTCCTGGGCGCCTTTAAACAGATCTCCCGTCAGTGCCATGGCAATTGGGCCGGTTCCGGCTGCCCCGATTCCCTGTAACGCTCGTCCTGCCATGACCCAAGGATAGGCATTGTCAAAAAAACCTGCCGCAAACCCGGCTAACAAACCGCCGGCACCATACAAAATTAAGCAGGGAATAATGATGACTTTCCTTGAGAATCGGTCTGCGAGATAACCGACAATCGGAATCGCAAATGCTGCAATCAAGGAAAATACTGTGATCACGAGACTGACTTGAAATTGTGATAAATGAAGTTCAGATTTCATTTTTGGCAAAATCGGAATAAGC > NC_000964/1176699‑1177170 | aGTCAGTACGATCGAAATGATACAAAACACAGGAAAGGCAAAAAACGCGCCATACCAGACAAGCAGGGCGATAAGCGAGCCAATGATCGGCGATAGCACTTTCCCCATGCCGTTTGAAGCTTCAACGAGGCCGAGCACCTTGCTCTCCTGGGCGCCTTTAAACAGATCTCCCGTCAGTGCCATTGCAATTGGGCCGGTTCCGGCTGCCCCGATTCCCTGTAACGCTCGTCCTGCCATGACCCAAGGGTAgg > 2:159148/1‑251 (MQ=255) cGAAATGATACAAAACACAGGAAAGGCAAAAAACGCGCCATACCAGACAAGCAGGGCGATCAGCGAGCCAATGATCGGCGATAGCACTTTCCCCATGCCGTTTGAAGCTTCAACGAGGCCGAGCACCTTGCTCTCCTGGGCGCCTTTAAACAGATCTCCCGTCAGTGCCATGGCAATTGGGCCGGTTCCGGCTGCCCCGATTCCCTGTAACGCTCGTCCTGCCATGACCCAAGGGTAGGCATTGTCaaaa < 1:259030/250‑1 (MQ=255) accacaGGAAAGCAAAAAAACGCCCCATACCGAACAACCAGGCCGACAAGCGAGCCAATGACCGGCGAACGCACTTTCCCCATCCCGTTTGAACCTCAAACTAGGCCGAGCCCCTTGCTCTCCTGGGCGCCTTTAACCAGATCTCCCGTCATTGCCATGGCAATTGGGCCGGTTCCGGCTGCCCCGATCCCCTGTAACGCTCGTCCTGCCATGACCCAAGGGTAGGCATTGTCAAAAAAACCTGCCGCaaa < 2:26420/249‑1 (MQ=255) tACCAGACAAGCAGGGCGATCAGCGAGCCAATGATCGGCGATAGCACTTTCCCCATGCCGTTTGAAGCTTCAACGAGGCCGAGCACCTTGCTCTCCTGGGCGCCTTTAAACAGATCTCCCGTCAGTGCCATGGCAATTGGGCCGGTTCCGGCTGCCCCGATTCCCTGTAACGCTCGTCCTGCCATGACCCAAGGCTAGGCATTGTCAAAAAAACCTGCCGCAAACCCGGCTAACAAACCGCCGGCACCAt > 1:158672/1‑250 (MQ=255) ccAGCGAGCAAATGATCGGCGATAGCACTTTCCCCATGCCTTTTGAAGCTCCACCGAGGCCGACCACCTTGCTCTCCGGGGCGCTTTTAAACAGATCCCCCGTCAGTGCCATGGCAATTGGGCCGGTTCCGGCTGCCCCGATTCCCTGTACCGCTCGTCCTGCCATGACCCAAGGGTAGGCATTGTCAAAAAAACCTGCCGCAAACCCGGCTAACAAACCGCCGGCACCATACAAAATTAAGCAGGGaata < 1:6299/250‑1 (MQ=255) cAATGACCGGCGATAGCACTTTCCCCATGCCGTTTGAAGCTTCAACGAGGCCGAGCACCTTGCTCTCCTGGGCGCCTTTAAACAGATCTCCCGTCAGTGCCATGGCAATTGGGCCGGTTCCGGCTGCCCCGATTCCCTGTAACGCTCGTCCTGCCATGACCCAAGGGTAGGCATTGTCAAAAAAACCTGCCGCAAACCCGGCTAACAAACCGCCGGCACCATACAAAATTAAGCAGGGAATAATGATGACt > 2:44603/1‑251 (MQ=255) aGCACTTTCCCCATGCCGTTTGAAGCTTCAACGAGGCCGAGCACCTTGCTCTCCTGGGCGCCTTTAAACAGATCTCCCGTCAGTGCCATGGCAATTGGGCCGGTTCCGGCTGCCCCGATTCCCTGTAACGCTCGTCCTGCCATGACCCAAGGGTAGGCATTGTCAAAAAAACCTGCCGCAAACCCGGCTAACAAACCGCCGGCACCATACAAAATTAAGCAGGGAATAATGATGACTTTCCTTGAGAATCg > 2:230615/1‑251 (MQ=255) tCCCCATGCCGTTTGAAGCTTCAACGAGGCCGAGCACCTTGCTCTCCTGGGCGCCTTTAAACAGATCTCCCGTCAGTGTCATGGCAATTGGGCCGGTTCCGGCTGCCCCGATTCCCTGTAACGCACGTCCTGCCATGACCCAAGGGTAGGCATTGTCAAAAAAACCTGCCGCAAACCCGGCTAACAAACCGCCGGCACCATACAAAATTAAGCAGGGAATAATGATGACTATCCTTGAGAATCGGACTGCg > 2:291378/1‑251 (MQ=255) tGAAGCTCCAACGAGGCCGGGCACCTTGCTCTCCTGGGCGCCTTTAAACAGATCTCCCGTCAGTGCCATGGCAATTGGGCCGGTTCCGGCTGCCCCGATTCCCTGTAACGCTCGTCCTGCCATGACCCAAGGGTAGGCATTGTCAAAAAACCCTGCCGCAAACCCGGCTAACAAACCGCCGGCACCATACAAAATTAAGCAGGGAATAATGATGACTTTCCTTGAGAATCGGTCTGCGAGATAACCGACa < 1:138906/250‑1 (MQ=255) ttCAACGAGGCCGAGCACCTTGCTCTCCTGGGCGCCTTTAAACAGATCTCCCGTCAGTGCCATGGCAATTGGGCCGGTTCCGGCTGCCCCGATTCCCTGTAACGCTCGTCCTGCCATGACCCAAGGGTAGGCATTGTCAAAAAAACCTGCCGCAAACCCGGCTAACAAACCGCCGGCACCATACAAAATTAAGCAGGGAATAATGATAACTTTCCTTGAGAATCGGTCTGCGAGATAACCGACAATCGGa > 2:161478/1‑250 (MQ=255) cGAGCACCTTGCTCTCCTGGGCGCCTTTAAACAGATCTCCCGTCAGTGCCATGGCAATTGGGCCGGTTCCGGCTGCCCCGATTCCCTGTAACGCTCGTCCTGCCATGACCCAAGGGTAGGCATTGTCAAAAAAACCTGCCGCAAACCCGGCTAACAAACCGCCGGCACCATACAAAATTAAGCAGGGAATAATGATGACTTTCCTTGAGAATCGGTCTGCGAGATAACCGACAATCGGAATCGCAAAtgct > 2:17912/1‑251 (MQ=255) cGAGCACCTTGCTCTCCTGGGCGCCTTTAAACAGATCTCCCGTCAGTGCCATGGCAATTGGGCCGGTTCCGGCTGCCCCGATTCCCTGTAACGCTCGTCCTGCCATGACCCAAGGGTAGGCATTGTCAAAAAAACCTGCCGCAAACCCGGCTAACAAACCGCCGGCACCATACAAAATTAAGCAGGGAATAATGATGACTTTCCTTGAGAATCGGTCTGCGAGATAACCGACAATCGGAATCGCAAAtgct > 2:186655/1‑251 (MQ=255) aaaCAGATCTCCCGTCAGTGCCATGGCAATTGGGCCGGTTCCGGCTGCCCCGATTCCCTGTAACGCTCGTCCTGCCATGACCCAAGGGTAGGCATTGTCAAAAAAACCTGCCGCAAACCCGGCTAACAAACCGCCGGCACCATACAAAATTAAGCAGGGAATAATGATGACTTTCCTTGAGAATCGGTCTGCGAGATAACCGACAATCGGAATCGCAAATGCTGCAATCAAGGAAAATACTGTGATCACg > 1:273609/1‑250 (MQ=255) gTGCCATGGCAATTGGGCGGGTCCCGGCTGCCCCAATTCCCGGTAACGCTCGTCCTGCCATGACCCAAGGGTAGGCATTGTCAAAAAAACCTGCCGCAAACCCGGCTAACAAACCGCCGGCACCATACAAAATTAAGCAGGGAATAATGATGACTTTCCTTGAGAATCGGTCTGCGAGATAACCGACAATCGGAATCGCAAATGCTGCAATCAAGGAAAATACTGTGATCACGAGACTGACTTGAAATtgt < 1:221903/251‑1 (MQ=255) cATGGCAATTGGGCCGGTTCCGGCTGCCCCGATTCCCTGTAACGCTCGTCCTGCCATGACCCAAGGGTAGGCATTGTCAAAAAAACCTGCCGCAAACCCGGCTAACAAACCGCCGGCACCATACAAAATTAAGCAGGGAATAATGATGACTTTCCTTGAGAATCGGTCTGCGAGATAACCGACAATCGGAATCGCAAATGCTGCAATCAAGGAAAATACTGTGATCACGAGACTGACTTGAAATTGTGAt > 1:320853/1‑250 (MQ=255) tcggCAATTGGGCCGGTTCCGGCTGCCCCGATTCCCTGTAACTCTCGTCCTGCCATGACCCAAGGGTAGGCATTGTCAAAAACACCTGCCGCAAACCCGGCTAACAAACCGCCGGCACCATACAAAATTAAGCAGGGAATAATGATGACTTTCCTTGAGAATCGGTCTGCGAGATAACCGACAATCGGAATCGCAAATGCTGCAATCCAGGAAAATACTGAGATCACGAGACTGACTTGAAATTGTGATa > 2:86770/3‑250 (MQ=255) tGGGCCGGTTCCGGCTGCCCCGATTCCCTGTAACGCTCGTCCTGCCATGACCCAAGGGTAGGCATTGTCAAAAAAACCTGCCGCAAACCCGGCTAACAAACCGCCGGCACCATACAAAATTAAGCAGGGAATAATGATGACTTTCCTTGAGAATCGGTCTGCGAGATAACCGACAATCGGAATCGCAAATGCTGCAATCAAGGAAAATACTGTGATCACGAGACTGACTTGAAATTGTGATAAATGaaatt > 2:326667/1‑248 (MQ=255) ggcggtttCCGGCTCCCCCGATCCCCTGTAACGCTCGTCCTGCCATGACCCAAGGGTAGGCATTTTCAAAAAACCCTGCCGCAAACCCGGCTAACAAACCGCCGGCACCATACAAAATTAAGCAGGGAATAATGATGACTTTCCTTGAGAATCGGTCTGCGAGATAACCGACAATCGGAATCGCAAATGCTGCAATCAAGGAAAATACTGTGATCACGAGACTGACTTGAAATTGTGATAAATGAAATTCa < 1:186655/245‑1 (MQ=255) ccGGCTGCCCCGATTCCCTGTAACGCTCGTCCTGCCATGACCCAAGGGTAGGCATTGTCAAAAAAACCTGCCGCACACCCGGCTAACAAACCGACGGCACCATACAAAATTAAGCAGGGAATAATGATGACTTTCCTTGAGAATCGGTCTGCGAGATAACCGACAATCGGAATCGCAAATGCTGCAATCAAGGAAAATACTGTGATCACGAGACTGACTTGAAATTGTGATAAATGAACTTCAGATTTCAt > 1:323786/1‑251 (MQ=255) cGCTCGTCCTGCCATGACCCAAGGGTAGGCATTGTCAAAAAAACCTGCCGCAAACCCGGCTAACAAACCGCCGGCACCATACAAAATTAAGCAGGGAATAATGATGACTTTCCTTGAGAATCGGTCTGCGAGATAACCGACAATCGGAATCGCAAATGCTGCAATCAAGGAAAATACTGTGATCACGAGACTGACTTGAAATTGTGATAAATGAAATTCAGATTTCATTTTTGGCAAAATCGGAATAAGc > 1:327849/1‑250 (MQ=255) | AGTCAGTACGATCGAAATGATACAAAACACAGGAAAGGCAAAAAACGCGCCATACCAGACAAGCAGGGCGATCAGCGAGCCAATGATCGGCGATAGCACTTTCCCCATGCCGTTTGAAGCTTCAACAAGGCCGAGCACCTTGCTCTCCTGGGCGCCTTTAAACAGATCTCCCGTCAGTGCCATGGCAATTGGGCCGGTTCCGGCTGCCCCGATTCCCTGTAACGCTCGTCCTGCCATGACCCAAGGATAGGCATTGTCAAAAAAACCTGCCGCAAACCCGGCTAACAAACCGCCGGCACCATACAAAATTAAGCAGGGAATAATGATGACTTTCCTTGAGAATCGGTCTGCGAGATAACCGACAATCGGAATCGCAAATGCTGCAATCAAGGAAAATACTGTGATCACGAGACTGACTTGAAATTGTGATAAATGAAGTTCAGATTTCATTTTTGGCAAAATCGGAATAAGC > NC_000964/1176699‑1177170 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |