New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000964	= 1153702	10 (0.260)	5 (0.140)	5/478	2.8	34.8%	intergenic (+81/‑87)	yisL/wprA	putative integral membrane protein/cell wall‑associated protease
	?	NC_000964	1153714 =	9 (0.240)					intergenic (+93/‑75)	yisL/wprA	putative integral membrane protein/cell wall‑associated protease

AAAAAGAAAAATCAACAGGAGGCCTGTGGGTCGGCTTCGTCATTGTCCTTTTGCTGACAGTGCTGCTCGGTCTGCATTTGCCAATTGGTTTTCAATTGTTTTAATAGAAAAACCTATGAACCCGGCTCTTTGATAGAGCTGGTTTTTTTTATATTTATCCCCTCATATTCCAAATCATTTAAAATAACCTTAAAATTCCCTGTAAGCGGTATCTCGTCCTATGAAATTATGATACCTTCAAGGAGATTCATTATTTTGCAGGAGGGATAACATGAAACGCAGAAAATTCAGCTCGGTTGTGGCGGCAGTGCTTATTTTTGCACTGATTTTCAGCCTTTTTTCTCCGGGAACCAAAGCTGCAGCGGCCGGCGCGATCGATCAGGCGGCTGCTCTGGAA‑AACGGCAAAGAGCAGACAGGCGCCATGAAGGAGCCGGAACAGGTGAA  >  NC_000964/1153518‑1153961                                                                                                                                                                                                     |                                                                                                                                                                                                                                                         aaaaagaaaaaTCAACAGGAGGCCTGTGGGTCGGCTTCGTCATTGTCCTTTTGCTGACAGTGCTGCTCGGTCTGCATTTGCCAATTGGTTTTCAATTGTTTTAATAGAAAAACCTATGAACCCGGCTCTTTGATAGCGCTGGTTTTTTTTATATTTATCCCCTCATATTCCAAATCATTTAAAATAACCTTAAAATTCCCTGTAAGCGGTATCTCGTCCTATGAAATTATGATACCTTCAAGGAGATTCat                                                                                                                                                                                                    >  1:282156/1‑251 (MQ=255)          gaaaaaagaaaaatcaacaggaggcctgtgggtcggcttcgtcattgtccttttgctgacagtgctgctcggtctgcatttgccaattggttttcaattgttttaatagaaaaacctatgaacccggctctttgatagagctggttttttttatatttatcccctcatattccaaatcatttaaaatTCCCTGTAAGCGGTATCTCGTCCTATGAAATTATGATACCTTCAAGGAGATTCATTATTTTGc                                                                                                                                                                                            >  2:55737‑M2/188‑250 (MQ=255)                     aatcaacaggaggcctgtgggtcggcttcgtcattgtccttttgctgacagtgctgctcggtctgcatttgccaattggttttcaattgttttactagaaaaacctatgaacccggctctttgatagagctggttttttttatatttatcccctcatattccaaatcatttaaaatTCCCTGTAAGCGGTATCTCGTCCTATGAAATTATGATACCTTCAAGGAGATTCATTATTTTGCAGGAGGGATAAc                                                                                                                                                                                >  1:246922‑M2/177‑251 (MQ=255)                                                                         gctgctcggtctgcatttgccaattggttttcaattgttttaatagaaaaacctatgaacccggctctttgatagagctggttttttttatatttatcccctcatattccaaatcatttaaaatTCCCTGTAAGCGGTATCTCGTCCTATGAAATTATGATACCTTCAAGGAGATTCATTATTTTGCAGGAGGGATAACATGAAACGCAGAAAATTCAGCTCGGTTGTGGCGGCAGTGCTTATTTTTGCAc                                                                                                                            <  1:271494‑M2/127‑1 (MQ=255)                                                                                      tGGTTTTCAATTGTTTTAATAGAAAAACCTATGAACCCGGCTCTTTGATAGAGCTGGTTTTTTTTATATTTATCCCCTCATATTCCAAATCATTTAAAATAACCTTAAAATTCCCTGTAAGCGGTATCTCGTCCTATGAAATTATGATACCTTCAAGGAGATTCATTATTTTGCAGGAGGGATAACATGAAACGCAGAAAATTCAGCTCGGTTGTGGCGGCAGTGCTTATTTTTGCAATGATTTTCAGCCt                                                                                                               >  1:153985/1‑251 (MQ=255)                                                                                      catttgccaattggttttcaattgttttaatagaaaaacctatgaacccggctctttgatagagctggttttttttatatttatcccctcatattccaaatcatttaaaatTCCCTGTAAGCGGTATCTCGTCCTATGAAATTATGATACCTTCAAGGAGATTCATTATTTTGCAGGAGGGATAACATGAAACGCAGAAAATTCAGCTCGGTTGTGGCGGCAGTGCTTATTTTTGCACTGATTTTCAGCCt                                                                                                               <  1:55737‑M2/140‑1 (MQ=255)                                                                                                                                  ttGATAGAGCTGGTTTTTTTTATATTTATCCCCTCATATTCCAAATCATTTAAAATAACCTTAAAATTCCCTGTAAGCGGTATCTCGTCCTATGAAATTATGATACCTTCAAGGAGATTCATTATTTTGCAGGAGGGATAACATGAAACGCAGAAAATTCAGCTCGGTTGTGGCGGCAGTGCTTATTTTTGCACTGATTTTCAGCCTTTTTTCTCCGGGAACCAAAGCTGCAGCGGCCGGCGcgatcg                                                                      <  1:237607/248‑1 (MQ=255)                                                                                                                                                        tatTTATCCCCTCATATTCCAAATCATTTAAAATAACCTTAAAATTCCCTGTAAGCGGTATCTCGTCCTATGAAATTATGATACCTTCAAGGAGATTCATTATTTTGCAGGAGGGATAACATGAAACGCAGAAAATTCAGCTCGGTTGTGGCGGCAGTGCTTATTTTTGCACTGATTTTCAGCCTTTTTTTTCCGGGAACCAAAACTTCAGCGGCCGGCGCGATCGATCCGGCGgct                                                           >  1:195781/1‑237 (MQ=255)                                                                                                                                                        tatTTATCCCCTCATATTCCAAATCATTTAAAATAACCTTAAAATTCCCTGTAAGCGGTATCTCGTCCTATGAAATTATGATACCTTCAAGGAGATTCATTATTTTGCAGGAGGGATAACATGAAACGCAGAAAATTCAGCTCGGTTGTGGCGGCAGTGCTTATTTTTGCACTGATTTTCAGCCTTTTTTCTCCGGGAACCAAAGCTGCAGCGGCCGGCGCGATCGATCAGGCGgct                                                           <  2:195781/237‑1 (MQ=255)                                                                                                                                                         gttttttttatatttatcccctcatattccaaatcatttaaaatTCCCTGTAAGCGGTATCTCGTCCTATGAAATTATGATACCTTCAAGGAGATTCATTATTTTGCAGGAGGGATAACATGAAACGCAGAAAATTCAGCTCGGTTGTGGCGGCAGTGCTTAATTTTGCACTGATTTTAAGCCTTTTTTCTCCGGGAACCAAAGCTGCAGCGGCCGGCGCGATCGATCAGGCGGCTGCTCTTGAA‑AACGGc                                           >  1:332675‑M2/45‑251 (MQ=255)                                                                                                                                                                    cATATTCCAAATCATTTAAAATAACCTTAAAATTCCCTGTAAGCGGTATCTCGTCCTATGAAATTATGATACCTTCAAGGAGATTCATTATTTTGCAGGAGGGATAACATGAAACGCAGAAAATTCAGCTCGGTTGTGGCGGCAGTGTTTATTTTTGCCCTGATTTTCAGCCTTTTTTTTCCGGGAACCAAAACTGCAGCGGCCGGGGTGTTCGATCCGGCGGCTGCTCTGGGA‑AACGGCAAAGAGCa                                   >  2:146812/1‑248 (MQ=255)                                                                                                                                                                    cATATTCCAAATCATTTAAAATAACCTTAAAATTCCCTGTAAGCGGTATCTCGTCCTATGAAATTATGATACCTTCAAGGAGATTCATTATTTTGCAGGAGGGATAACATGAAACGCAGAAAATTCAGCTCGGTTGTGGCGGCAGTGCTTATTTTTGCACTGATTTTCAGCCTTTTTTCTCCGGGAACCAAAGCTGCAGCGGCCGGCGCGATCGATCAGGCGGCTGCTCTGGAA‑AACGGCAAAGAGCa                                   <  1:146812/248‑1 (MQ=255)                                                                                                                                                                                   ttAAAATAACCTTAAAATTCCCTGTAAGCGGTATCTCGTCCTATGAAATTATGATACCTTCAAGGAGATTCATTATTTTGCAGGAGGGATAACATGAAACGCAGAAAATTCAGCTCGGTTGTGGCGGCAGTGCTTATTTTTGCACTGATTTTCAGCCTTTTTTCTCCGGGAACCAAAGCTGCAGCGGCCGGCGCGATCGCTCAGGCGGCTGCTCTGGGA‑AACGGCAAAGAGCAGACAGGCGCCATGAAgg                  >  1:262606/1‑250 (MQ=255)                                                                                                                                                                                   ttAAAATAACCTTAAAATTCCCTGTAAGCGGTATCTCGTCCTATGAAATTATGATACCTTCAAGGAGATTCATTATTTTGCAGGAGGGATAACATGAAACGCAGAAAATTCAGCTCGGTTGTGGCGGCAGTGCTTATTTTTGCACTGATTTTCAGCCTTTTTTCTCCGGGAACCAAAGCTGCAGCGGCCGGCGCGATCGATCAGGCGGCTGCTCTGGGA‑AACGGCAAAGAGCAGACAGGCGCCATGAAgg                  >  1:263403/1‑250 (MQ=255)                                                                                                                                                                                               tAAAATTCCCTGTAAGCGGTATCTCGTCCTATGAAATTATGATTCCTTCAAGGAGATTCATTATTTTGCAGGAGGGATAACATGAAGCGCAGAAAATTCAGCTCGGTTGTGGCGGCAGTGCTTATTAGTTCACTGATTTTCAGCCTTTTTTCTCCGGGAACCAAAGCTGCAGCGGCCGGCGCGATCGAACAGGCGGCTGCGCTGGAA‑AACGGCAAAGAGCAGACAGGCGCCGTGAAGGAGGCGCAACAg       <  1:236856/249‑1 (MQ=255)                                                                                                                                                                                                  aaTTCCCTGTAAGCGGTATCTCGTCCTATGAAATTATGATACCTTCAAGGAGATTCATTATTTTGCAGGAGGGATAACATGAAACGCAGAAAATTCAGCTCGGTTGTGGCGGCAGGGCTTATTTTTGCACTGATTTTAAGCCTTTTTTTTCCGGGAACCAAAGCTGCAGCGGCCGGCGCGATCGATCCGGCGGCTGCTCTGGAACAACG‑CAAAGAGCAGACAGGCGCCCGGAAGGGGCCGGAACAgggga   >  2:5394/1‑247 (MQ=255)                                                                                                                                                                                                   aTTCCCTGTAAGCGGTATCTCGTCCTATGAAATTATGATACCTTCAAGGAGATTCATTATTTTGCAGGAGGGATAACATGAAACGCAGAAAATTCAGCTCGGTTGTGGCGGCAGTGCTTATTTTTGCACTGATTTTCAGCCTTTTTTTTCCGGGAACCAAAGCTGCAGCGGCCGGCGCGATAGATCAGGCGGCTGCTCTGGGA‑AACGGCAAAGAGCAGGCAGGCGCCCTGAAGGAGCCGGAACAGGGGaa  >  2:64550/1‑250 (MQ=255)                                                                                                                                                                                                     |                                                                                                                                                                                                                                                         AAAAAGAAAAATCAACAGGAGGCCTGTGGGTCGGCTTCGTCATTGTCCTTTTGCTGACAGTGCTGCTCGGTCTGCATTTGCCAATTGGTTTTCAATTGTTTTAATAGAAAAACCTATGAACCCGGCTCTTTGATAGAGCTGGTTTTTTTTATATTTATCCCCTCATATTCCAAATCATTTAAAATAACCTTAAAATTCCCTGTAAGCGGTATCTCGTCCTATGAAATTATGATACCTTCAAGGAGATTCATTATTTTGCAGGAGGGATAACATGAAACGCAGAAAATTCAGCTCGGTTGTGGCGGCAGTGCTTATTTTTGCACTGATTTTCAGCCTTTTTTCTCCGGGAACCAAAGCTGCAGCGGCCGGCGCGATCGATCAGGCGGCTGCTCTGGAA‑AACGGCAAAGAGCAGACAGGCGCCATGAAGGAGCCGGAACAGGTGAA  >  NC_000964/1153518‑1153961

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.