New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000964	1194825 =	0 (0.000)	18 (0.550) +ATCGATTTCCGGTACCGGAACTCGAGCCTTGAGCTC	17/420	0.8	61.9%	coding (493/495 nt)	yitZ	putative transport protein
	?	NC_000964	3788113 =	26 (0.680)					intergenic (‑110/+313)	atpI/upp	ATP synthase (subunit i)/uracil phosphoribosyltransferase

TCTTTGGAGCGATGCAAAAGCATGGAGAAAAAGTGCTGATCGCTAATTTTACAGACAGTGGAGAGCGTGGAAAGAAGATCGGGAATTACCATTTTTGGACAGCTGTCTTTTCAGCAGCAGCCATTATGCTCGGGGGCTTTCTCGCTGACTTTTTCACAGTGCAAATGATTTTTTATGCAAGCTCTATTCTATATTTTTTGAGTGGATTGATGATGATGAAAACAGGCTGACGCGGTCAGCCTGTTTTTTTATGCGGCTGAAATGCGGCACCGCATCAACGTTTTTGTGCTGGAGTCGTGCTGATTTTTTTT‑GAGCGGAATTCCCATTGAACAGAAAATTTATAAATGAATAAAAATATTAAATATACGATTGAATTAATTTTTATTCATGTTATAATGTTAAATAATTTCACAAAGACCAAGAGGGTGAACTTGTTTTGAAAATAGGAATTGTA  >  NC_000964/1194598‑1195051                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                    tttaactttaagcagattgacacatgttaggggctattgtatgctaaacgagggtattatgagaaggttttcatagctttcattatagtcctcgtcctcaatgtaaatcctctcagcaaacccgtattatgaggatttatttaagcgaatgaaacagcatccctgcaaggcttgcggatgaatgattttttgagctcaaggctcgagttccggtaccggaaatcgatTGACGCGGTCAGCCTGttttttt                                                                                                                                                                                                               <  1:326596‑M1/23‑1 (MQ=255)         taagcagattgacacatgttaggggctattgtatgctaaacgagggtattatgagaaggttttcatagctttcattatagtcctcgtcctcaatgtaaatcctctcagcaaacccgtattatgaggatttatttaagcgaatgaaacagcatccctgcaaggcttgcggatgaatgattttttgagctcaaggctcgagttccggtaccggaaatcgatTGACGCGGTCAGCCTGTTTTTTTATGCGGCt                                                                                                                                                                                                       >  1:195538‑M1/220‑250 (MQ=255)                        atgttaggggctattgtatgctaaacgagggtattatgagaaggttttcatagctttcattatagtcctcgtcctcaatgtaaatcctctcagcaaacccgtattatgaggatttatttaagcgaatgaaacagcatccctgcaaggcttgcggatgaatgattttttgagctcaaggctcgagttccggtaccggaaatcgatTGACGCGGTCAGCCTGTTTTTTTATGCGGCTGAAATGCGGCACCGCa                                                                                                                                                                                       >  1:345602‑M1/205‑251 (MQ=255)                                                   agggtattatgagaaggttttcatagctttcattatagtcctcgtcctcaatgtaaatcctctcagcaaacccgtattatgaggatttatttaagcgaatgaaacagcatccctgcaaggcttgcggatgaatgattttttgagctcaaggctcgagttccggtaccggaaatcgatTGACGCGGTCAGCCTGTTTTTTTATGCGGCTGAAATGCGGCACCGCATCAACGTTTTTGTGCTGGAGTCGTGCt                                                                                                                                                            <  1:344949‑M1/74‑1 (MQ=255)                                                     ggtattatgagaaggttttcatagctttcattatagtcctcgtcctcaatgtaaatcctctcagcaaacccgtattatgaggatttatttaagcgaatgaaacagcatccctgcaaggcttgcggatgaatgattttttgagctcaaggctcgagttccggtaccggaaatcgatTGACGCGGTCAGCCTGTTTTTTTATGCGGCTGAAATGCGGCACCGCATCAACGTTTTTGTGCTGGAGTCGTGCTGa                                                                                                                                                          >  1:283349‑M1/176‑251 (MQ=255)                                                                 aggttttcatagctttaattatagtcctcgtcctcaatgtaaatcctctcagcaaacccgtattatgaggatttatttaagcgaatgaaacagcatccctgcaaggcttgcggatgaatgattttttgagctcaaggctcgcgttccggtaccggaaatcgatTGACGCGGTCAGCCTGTTTTTTTATGCGGCTGAAATGCGGCACCGCATCAACGTTTTTGTGCTGTAGTCGTGCtgatttttttatg                                                                                                                                                <  2:98543‑M1/86‑4 (MQ=255)                                                                  ggttttcatagctttcattatagtcctcgtcctcaatgtaaatcctctcagcaaacccgtattatgaggatttatttaagcgaatgaaacagcatccctgcaaggcttgcggatgaatgattttttgagctcaaggctcgagttccggtaccggaaatcgatTGACGCGGTCAGCCTGTTTTTTTATGCGGCTGAAATGCGGCACCGCATCAACGTTTTTGTGCTGGAGTCGTgctgatttttttttgagc                                                                                                                                             >  1:6687‑M1/163‑246 (MQ=255)                                                                       tcatagctttcattatagtcctcgtcctcaatgtaaatcctctcagcaaacccgtattatgaggatttatttaagcgaatgaaacagcatccctgcaaggcttgcggatgaatgattttttgagctcaaggctcgagttccggtaccggaaatcgatTGACGCGGTCAGCCTGTTTTTTTATGCGGCTGAAATGCGGCACCGCATCAACGTTTTTGTGCTGGAGTCGTGCTGATTTTTTTTTGAGCGGAAt                                                                                                                                        <  1:123721‑M1/94‑1 (MQ=255)                                                                                tcattatagtcctcgtcctcaatgtaaatcctctcagcaaacccgtattatgaggatttatttaagcgaatgaaacagcatccctgcaaggcttgcggatgaatgattttttgagctcaaggctcgagttccggtaccggaaatcgatTGACGCGGTCAGCCTGTTTTTTTATGCGGCTGAAATGCGGCACCGCATCAACGTTTTTGTGCTGGAGTCGTGCTGATTTTTTTTTGAGCGGAATTCCCATTg                                                                                                                                >  2:62011‑M1/149‑250 (MQ=255)                                                                                    tatagtcctcgtcctcaatgtaaatcctctcagcaaacccgtattatgaggatttatttaagcgaatgaaacagcatccctgcaaggcttgcgtatgaatgattttttgagctcaaggctcgagttccggtaccggaaatcgatTGACGCGGTCAGCCTGTTTTTTTATGCGGCTGAAATGCGGCACCGCACCAACGTTTTTGTGCTGGAGTCGTGCTGATTTTTTTTTGAGCGGAATTCCCATTGAACa                                                                                                                            >  2:300751‑M1/145‑250 (MQ=255)                                                                                       agtcctcgtcctcaatgtaaatcctctcagcaaacccgtattatgaggatttatttaagcgaatgaaacagcatccctgcaaggcttgcggatgaatgattttttgagctcaaggctcgagttccggtaccggaaatcgatTGACGCGGTCAGCCTGTTTTTTTATGCGGCTGAAATGCGGCACCGCATCAACGTTTTTGTGCTGGAGGCGTGCTGATTTTTTTTTGAGCGGAATTCCCATTGAACAGaa                                                                                                                         >  2:48082‑M1/142‑250 (MQ=255)                                                                                           cgcgtcctcaatgtaaagcctctcagcaaacccgtattatgaggatttatgtaagcgaatgaaacagcatcccggaaaggcttgcggatgaatgatttttggagctcaaggcgcgagttccgggaccggaaatcgatGGACGCGGTCAGCCTGTTTTTTTATGCGGCTGAAATGCGGCACCGCATCAACGTGTGTGTGCTGGAGTCGTGCTGATTTTTTTTTGAGCGGAATTCCCATTGAACAGAAAAttt                                                                                                                    >  1:74441‑M1/138‑251 (MQ=255)                                                                                                                                            tttaagcgaatgaaacagcatccctgcaaggcttgcggatgaatgattttttgagctcaaggctcgagttccggtaccggaaatcgatTGACGCGGTCAGCCTGTTTTTTTATGCGGCTGAAATGCGGCACCGCATCAACGTTTTTGTGCTGGAGTCGTGCTGATTTTTTTTTGAGCGGAATTCCCATTGAACAGAAAATTTATAAATGAATAAAAATATTAAATATACGATTGAATTAATTTTTATTCAt                                                                   <  1:270466‑M1/163‑1 (MQ=255)                                                                                                                                                   gaatgaaacagcatccctgcaaggcttgcggatgaatgattttttgagctcaaggctcgagttccggtaccggaaatcgatTGACGCGGTCAGCCTGTTTTTTTATGCGGCTGAAATGCGGCACCGCATCAACGTTTTTGTGCTGGAGTCGTGCTGATTTTTTTTTGAGCGGAATTCCCATTGAACAGAAAATTTATAAATGAATAAAAATATTAAATATACGATTGAATTAATTTTTATTCATGTtata                                                             <  1:247568‑M1/169‑1 (MQ=255)                                                                                                                                                       gaaacagcatccctgcaaggcttgcggatgaatgattttttgagctcaaggctcgagttccggtaccggaaatcgatTGACGCGGTCAGCCTGTTTTTTTATGCGGCTGAAATGCGGCACCGCATCAACGTTTTTGTGCTGGAGTCGTGCTGATTTTTTTTTGAGCGGAATTCCCATTGAACAGAAAATTTATAAATGAATAAAAATATTAAATATACGATTGAATTAATTTTTATTCATGTTATAATGt                                                         >  2:326596‑M1/78‑250 (MQ=255)                                                                                                                                                                     gcaaggcttgcggatgaatgattttttgagctcaaggctcgagttccggtaccggaaatcgatTGACGCGGTCAGCCTGTTTTTTTATGCGGCTGAAATGCGGCACCGCATCAACGTTTTTGTGCTGGAGTCGTGCTGATTTTTTTTTGAGCGGAATTCCCATTGAACAGAAAATTTATAAATGAATAAAAATATTAAATATACGATTGAATTAATTTTTATTCATGTTATAATGTTAAATAATTTcaca                                           >  1:145846‑M1/64‑250 (MQ=255)                                                                                                                                                                                   tgaatgattttttgagctcaaggctcgagttccggtaccggaaatcgatTGACGCGGTCAGCCTGTTTTTTTATGCGGCTGAAATGCGGCACCGCATCAACGTTTTTGTGCTGGAGTCGTGCTGATTTTTTTTTGAGCGGAATTCCCATTGAACAGAAAATTTATAAATGAATAAAAATATTAAATATACGATTGAATTAATTTTTATTCATGTTATAATGTTAAATAATTTCACAAAGACAAAGAGGGTg                            <  2:144225‑M1/202‑1 (MQ=255)                                                                                                                                                                                        gatttttttagctcaaggttcgagttccggtaccggaaatcgatTGACTCGGTCAGCCTGTTTTTTTATGCGGCTGAAATGCGGCACCGCATCAACGTTTTTGTGCTGGAGTCGTGCTGATTTTTTTTTGAGCGGAATTCCCATTGAACAGAAAATTTATAAATGAATAAAAATATTAAATATACGATTGAATTAATTTTTATTCATGTTATAATGTTAAATAATTTCACAAAGACCAAGAGGGTGAACt                        >  2:58886‑M1/45‑250 (MQ=255)                                                                                                                                                                                                      aaggctcgagttccggtaccggaaatcgatTGACGCGGTCAGCCTGTTTTTTTATGCGGCTGAAATGCGGCACTGCATCAACGTTTTTGTGCTGGAGTCGTGCTGATTTTTTTTTGAGCGGAATTCCCATTGAACAGAAAATTTATAAATGAATAAAAATATTAAATATACGATTGAATTAATTTTTATTCATGTTATAATGTTAAATAATTTCACAAAGACCAAGAGGGTGAACTTGTTTTGAAAATAgg         <  2:340400‑M1/221‑1 (MQ=255)                                                                                                                                                                                                           tcgagttccggtaccggaaatcgatTGACGCGGTCAGCCTGTTTTTTTATGCGGCTGAACTGCGGCACCGCATCAACGTTTTTGTGCTGGAGTCGTGCTGCTTTTTTTTTGAGCGGAATTCCCATTGACCAGAAAATTTATAAATGAATAAAAATATTCAATATACGATTGAATTAATTTTTATTCATGTTATAATGTTAAATAATTTCACAAAGACCACGAGGGAGAACTTGTTTTACAAATAGGAATTg    <  2:243715‑M1/226‑1 (MQ=255)                                                                                                                                                                                                             gagttccggtaccggaaatcgatTGACGCGGTCAGCCTGTTTTTTTATGCGGCTGAAATGCGGCACCGCATCAACGTTTTTGTGCTGGAGTCGTGCTGATTTTTTTTTGAGCGGAATGCCCATTGAACAGAAAATTTATAAATGAATAAAAATGTTAAATATACGATTGAATTAATTTTTATTCATGTTATAATGTTAAATAATTTCACAAAGACCAAGAGGGTGAACTTGTTTTGAAAATAGGAAGTGTa  >  1:92859‑M1/24‑251 (MQ=255)                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                    TCTTTGGAGCGATGCAAAAGCATGGAGAAAAAGTGCTGATCGCTAATTTTACAGACAGTGGAGAGCGTGGAAAGAAGATCGGGAATTACCATTTTTGGACAGCTGTCTTTTCAGCAGCAGCCATTATGCTCGGGGGCTTTCTCGCTGACTTTTTCACAGTGCAAATGATTTTTTATGCAAGCTCTATTCTATATTTTTTGAGTGGATTGATGATGATGAAAACAGGCTGACGCGGTCAGCCTGTTTTTTTATGCGGCTGAAATGCGGCACCGCATCAACGTTTTTGTGCTGGAGTCGTGCTGATTTTTTTT‑GAGCGGAATTCCCATTGAACAGAAAATTTATAAATGAATAAAAATATTAAATATACGATTGAATTAATTTTTATTCATGTTATAATGTTAAATAATTTCACAAAGACCAAGAGGGTGAACTTGTTTTGAAAATAGGAATTGTA  >  NC_000964/1194598‑1195051

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.