New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000964	= 1153702	10 (0.260)	5 (0.140)	5/478	2.8	34.8%	intergenic (+81/‑87)	yisL/wprA	putative integral membrane protein/cell wall‑associated protease
	?	NC_000964	1153714 =	9 (0.240)					intergenic (+93/‑75)	yisL/wprA	putative integral membrane protein/cell wall‑associated protease

GCCGGCAAAATGATTCTGGGCATTATCACCATCGGCCTGATGGAAATGCTCCTCATCCGCAAGAAAAAAGAAAAATCAACAGGAGGCCTGTGGGTCGGCTTCGTCATTGTCCTTTTGCTGACAGTGCTGCTCGGTCTGCATTTGCCAATTGGTTTTCAATTGTTTTAATAGAAAAACCTATGAACCCGGCTCTTTGATAGAGCTGGTTTTTTTTATATTTATCCCCTCATATTCCAAATCATTTAAAATAACCTTAAAATTCCCTGTAAGCGGTATCTCGTCCTATGAAATTATGATACCTTCAAGGAGATTCATTATTTTGCAGGAGGGATAACATGAAACGCAGAAAATTCAGCTCGGTTGTGGCGGCAGTGCTTATTTTTGCACTGATTTTCAGCCTTTTTTCTCCGGGAACCAAAGCTGCAGCGGCCGGCGCGATCGATCAGGCGGCTGCTCTGGAAAACGGCAAAGAGCAGACAGGCGCCATGAAGG  >  NC_000964/1153454‑1153945                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                    gCCGGCAAAATGATTCTGGGCATTATCACCATCGGCCTGATGGAAATGCTCCTCATCCGCAAGAAAAAAGAAAAATCAACAGGAGGCCTGTGGGTCGGCTTCGTCATTGTCCTTTTGCTGACAGTGCTGCTCGGTCTGCATTTGCCAATTGGTTTTCAATTGTTTTAATAGAAAAACCTATGAACCCGGCTCTTTGATAGAGCTGGTTTTTTTTATATTTATCCCCTCATATTCCAAATCATTTAAAATa                                                                                                                                                                                                                                                    >  1:20009/1‑250 (MQ=255)                                                               gaaaaaagaaaaaTCAACAGGAGGCCTGTGGGTCGGCTTCGTCATTGTCCTTTTGCTGACAGTGCTGCTCGGTCTGCATTTGCCAATTGGTTTTCAATTGTTTTAATAGAAAAACCTATGAACCCGGCTCTTTGATAGAGCTGGTTTTTTTTATATTTATCCCCTCATATTCCAAATCATTTAAAATtccctgtaagcggtatctcgtcctatgaaattatgataccttcaaggagattcattattttgc                                                                                                                                                                                      >  2:55737‑M1/1‑187 (MQ=255)                                                                 aaaaagaaaaaTCAACAGGAGGCCTGTGGGTCGGCTTCGTCATTGTCCTTTTGCTGACAGTGCTGCTCGGTCTGCATTTGCCAATTGGTTTTCAATTGTTTTAATAGAAAAACCTATGAACCCGGCTCTTTGATAGCGCTGGTTTTTTTTATATTTATCCCCTCATATTCCAAATCATTTAAAATAACCTTAAAATTCCCTGTAAGCGGTATCTCGTCCTATGAAATTATGATACCTTCAAGGAGATTCat                                                                                                                                                                                   >  1:282156/1‑251 (MQ=255)                                                                          aaTCAACAGGAGGCCTGTGGGTCGGCTTCGTCATTGTCCTTTTGCTGACAGTGCTGCTCGGTCTGCATTTGCCAATTGGTTTTCAATTGTTTTACTAGAAAAACCTATGAACCCGGCTCTTTGATAGAGCTGGTTTTTTTTATATTTATCCCCTCATATTCCAAATCATTTAAAATtccctgtaagcggtatctcgtcctatgaaattatgataccttcaaggagattcattattttgcaggagggataac                                                                                                                                                                          >  1:246922‑M1/1‑176 (MQ=255)                                                                                                                              gctgctCGGTCTGCATTTGCCAATTGGTTTTCAATTGTTTTAATAGAAAAACCTATGAACCCGGCTCTTTGATAGAGCTGGTTTTTTTTATATTTATCCCCTCATATTCCAAATCATTTAAAATtccctgtaagcggtatctcgtcctatgaaattatgataccttcaaggagattcattattttgcaggagggataacatgaaacgcagaaaattcagctcggttgtggcggcagtgcttatttttgcac                                                                                                                      <  1:271494‑M1/251‑128 (MQ=255)                                                                                                                                           cATTTGCCAATTGGTTTTCAATTGTTTTAATAGAAAAACCTATGAACCCGGCTCTTTGATAGAGCTGGTTTTTTTTATATTTATCCCCTCATATTCCAAATCATTTAAAATtccctgtaagcggtatctcgtcctatgaaattatgataccttcaaggagattcattattttgcaggagggataacatgaaacgcagaaaattcagctcggttgtggcggcagtgcttatttttgcactgattttcagcct                                                                                                         <  1:55737‑M1/251‑141 (MQ=255)                                                                                                                                                      tGGTTTTCAATTGTTTTAATAGAAAAACCTATGAACCCGGCTCTTTGATAGAGCTGGTTTTTTTTATATTTATCCCCTCATATTCCAAATCATTTAAAATAACCTTAAAATTCCCTGTAAGCGGTATCTCGTCCTATGAAATTATGATACCTTCAAGGAGATTCATTATTTTGCAGGAGGGATAACATGAAACGCAGAAAATTCAGCTCGGTTGTGGCGGCAGTGCTTATTTTTGCAATGATTTTCAGCCt                                                                                              >  1:153985/1‑251 (MQ=255)                                                                                                                                                                                                  ttGATAGAGCTGGTTTTTTTTATATTTATCCCCTCATATTCCAAATCATTTAAAATAACCTTAAAATTCCCTGTAAGCGGTATCTCGTCCTATGAAATTATGATACCTTCAAGGAGATTCATTATTTTGCAGGAGGGATAACATGAAACGCAGAAAATTCAGCTCGGTTGTGGCGGCAGTGCTTATTTTTGCACTGATTTTCAGCCTTTTTTCTCCGGGAACCAAAGCTGCAGCGGCCGGCGcgatcg                                                     <  1:237607/248‑1 (MQ=255)                                                                                                                                                                                                              gTTTTTTTTATATTTATCCCCTCATATTCCAAATCATTTAAAATtccctgtaagcggtatctcgtcctatgaaattatgataccttcaaggagattcattattttgcaggagggataacatgaaacgcagaaaattcagctcggttgtggcggcagtgcttaattttgcactgattttaagccttttttctccgggaaccaaagctgcagcggccggcgcgatcgatcaggcggctgctcttgaaaacggc                                      >  1:332675‑M1/1‑44 (MQ=255)                                                                                                                                                                                                                        tatTTATCCCCTCATATTCCAAATCATTTAAAATAACCTTAAAATTCCCTGTAAGCGGTATCTCGTCCTATGAAATTATGATACCTTCAAGGAGATTCATTATTTTGCAGGAGGGATAACATGAAACGCAGAAAATTCAGCTCGGTTGTGGCGGCAGTGCTTATTTTTGCACTGATTTTCAGCCTTTTTTTTCCGGGAACCAAAACTTCAGCGGCCGGCGCGATCGATCCGGCGgct                                          >  1:195781/1‑237 (MQ=255)                                                                                                                                                                                                                        tatTTATCCCCTCATATTCCAAATCATTTAAAATAACCTTAAAATTCCCTGTAAGCGGTATCTCGTCCTATGAAATTATGATACCTTCAAGGAGATTCATTATTTTGCAGGAGGGATAACATGAAACGCAGAAAATTCAGCTCGGTTGTGGCGGCAGTGCTTATTTTTGCACTGATTTTCAGCCTTTTTTCTCCGGGAACCAAAGCTGCAGCGGCCGGCGCGATCGATCAGGCGgct                                          <  2:195781/237‑1 (MQ=255)                                                                                                                                                                                                                                    cATATTCCAAATCATTTAAAATAACCTTAAAATTCCCTGTAAGCGGTATCTCGTCCTATGAAATTATGATACCTTCAAGGAGATTCATTATTTTGCAGGAGGGATAACATGAAACGCAGAAAATTCAGCTCGGTTGTGGCGGCAGTGTTTATTTTTGCCCTGATTTTCAGCCTTTTTTTTCCGGGAACCAAAACTGCAGCGGCCGGGGTGTTCGATCCGGCGGCTGCTCTGGGAAACGGCAAAGAGCa                   >  2:146812/1‑248 (MQ=255)                                                                                                                                                                                                                                    cATATTCCAAATCATTTAAAATAACCTTAAAATTCCCTGTAAGCGGTATCTCGTCCTATGAAATTATGATACCTTCAAGGAGATTCATTATTTTGCAGGAGGGATAACATGAAACGCAGAAAATTCAGCTCGGTTGTGGCGGCAGTGCTTATTTTTGCACTGATTTTCAGCCTTTTTTCTCCGGGAACCAAAGCTGCAGCGGCCGGCGCGATCGATCAGGCGGCTGCTCTGGAAAACGGCAAAGAGCa                   <  1:146812/248‑1 (MQ=255)                                                                                                                                                                                                                                                   ttAAAATAACCTTAAAATTCCCTGTAAGCGGTATCTCGTCCTATGAAATTATGATACCTTCAAGGAGATTCATTATTTTGCAGGAGGGATAACATGAAACGCAGAAAATTCAGCTCGGTTGTGGCGGCAGTGCTTATTTTTGCACTGATTTTCAGCCTTTTTTCTCCGGGAACCAAAGCTGCAGCGGCCGGCGCGATCGCTCAGGCGGCTGCTCTGGGAAACGGCAAAGAGCAGACAGGCGCCATGAAgg  >  1:262606/1‑250 (MQ=255)                                                                                                                                                                                                                                                   ttAAAATAACCTTAAAATTCCCTGTAAGCGGTATCTCGTCCTATGAAATTATGATACCTTCAAGGAGATTCATTATTTTGCAGGAGGGATAACATGAAACGCAGAAAATTCAGCTCGGTTGTGGCGGCAGTGCTTATTTTTGCACTGATTTTCAGCCTTTTTTCTCCGGGAACCAAAGCTGCAGCGGCCGGCGCGATCGATCAGGCGGCTGCTCTGGGAAACGGCAAAGAGCAGACAGGCGCCATGAAgg  >  1:263403/1‑250 (MQ=255)                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                    GCCGGCAAAATGATTCTGGGCATTATCACCATCGGCCTGATGGAAATGCTCCTCATCCGCAAGAAAAAAGAAAAATCAACAGGAGGCCTGTGGGTCGGCTTCGTCATTGTCCTTTTGCTGACAGTGCTGCTCGGTCTGCATTTGCCAATTGGTTTTCAATTGTTTTAATAGAAAAACCTATGAACCCGGCTCTTTGATAGAGCTGGTTTTTTTTATATTTATCCCCTCATATTCCAAATCATTTAAAATAACCTTAAAATTCCCTGTAAGCGGTATCTCGTCCTATGAAATTATGATACCTTCAAGGAGATTCATTATTTTGCAGGAGGGATAACATGAAACGCAGAAAATTCAGCTCGGTTGTGGCGGCAGTGCTTATTTTTGCACTGATTTTCAGCCTTTTTTCTCCGGGAACCAAAGCTGCAGCGGCCGGCGCGATCGATCAGGCGGCTGCTCTGGAAAACGGCAAAGAGCAGACAGGCGCCATGAAGG  >  NC_000964/1153454‑1153945

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.