New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000964	1194825 =	0 (0.000)	18 (0.550) +ATCGATTTCCGGTACCGGAACTCGAGCCTTGAGCTC	17/420	0.8	61.9%	coding (493/495 nt)	yitZ	putative transport protein
	?	NC_000964	3788113 =	26 (0.680)					intergenic (‑110/+313)	atpI/upp	ATP synthase (subunit i)/uracil phosphoribosyltransferase

TACAATTCCTATTTTCAAAACAAGTTCACCCTCTTGGTCTTTGTGAAATTATTTAACATTATAACATGAATAAAAATTAATTCAATCGTATATTTAATATTTTTATTCATTTATAAATTTTCTGTTCAATGGGAATTCCGCTCAAAAAAAA‑TCAGCACGACTCCAGCACAAAAACGTTGATGCGGTGCCGCATTTCAGCCGCATAAAAAAACAGGCTGACCGCGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000964/1195051‑1194825 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAAATCATTCATCCGCAAGCCTTGCAGGGATGCTGTTTCATTCGCTTAAATAAATCCTCATAATACGGGTTTGCTGAGAGGATTTACATTGAGGATGAGGACTATAATGAAAGCTATGAAAACCTTCTCATAATACCCTCGTTTAGCATACAATAGCCCCTAACATGTGTCAATCTGTTTAAAGTTAAAAAACTTTTTATACTTTACGTCTCCACAGAATGTTCACATTTTCACCTAT  >  NC_000964/3788113‑3788352                                                                                                                                                                                                                                     ||||||||||||||||||||||||||||||||||||                                                                                                                                                                                                                                                 TACACTTCCTATTTTCAAAACAAGTTCACCCTCTTGGTCTTTGTGAAATTATTTAACATTATAACATGAATAAAAATTAATTCAATCGTATATTTAACATTTTTATTCATTTATAAATTTTCTGTTCAATGGGCATTCCGCTCAAAAAAAAATCAGCACGACTCCAGCACAAAAACGTTGATGCGGTGCCGCATTTCAGCCGCATAAAAAAACAGGCTGACCGCGTCAATCGATTTCCGGTACCGGAACTC                                                                                                                                                                                                                                                               >  1:92859/1‑251   CAATTCCTATTTGTAAAACAAGTTCTCCCTCGTGGTCTTTGTGAAATTATTTAACATTATAACATGAATAAAAATTAATTCAATCGTATATTGAATATTTTTATTCATTTATAAATTTTCTGGTCAATGGGAATTCCGCTCAAAAAAAAAGCAGCACGACTCCAGCACAAAAACGTTGATGCGGTGCCGCAGTTCAGCCGCATAAAAAAACAGGCTGACCGCGTCAATCGATTTCCGGTACCGGAACTCGA                                                                                                                                                                                                                                                             <  2:243715/251‑1        CCTATTTTCAAAACAAGTTCACCCTCTTGGTCTTTGTGAAATTATTTAACATTATAACATGAATAAAAATTAATTCAATCGTATATTTAATATTTTTATTCATTTATAAATTTTCTGTTCAATGGGAATTCCGCTCAAAAAAAAATCAGCACGACTCCAGCACAAAAACGTTGATGCAGTGCCGCATTTCAGCCGCATAAAAAAACAGGCTGACCGCGTCAATCGATTTCCGGTACCGGAACTCGAGCCTT                                                                                                                                                                                                                                                        <  2:340400/251‑1                       AGTTCACCCTCTTGGTCTTTGTGAAATTATTTAACATTATAACATGAATAAAAATTAATTCAATCGTATATTTAATATTTTTATTCATTTATAAATTTTCTGTTCAATGGGAATTCCGCTCAAAAAAAAATCAGCACGACTCCAGCACAAAAACGTTGATGCGGTGCCGCATTTCAGCCGCATAAAAAAACAGGCTGACCGAGTCAATCGATTTCCGGTACCGGAACTCGAACCTTGAGCTAAAAAAATC                                                                                                                                                                                                                                          >  2:58886/1‑250                           CACCCTCTTTGTCTTTGTGAAATTATTTAACATTATAACATGAATAAAAATTAATTCAATCGTATATTTAATATTTTTATTCATTTATAAATTTTCTGTTCAATGGGAATTCCGCTCAAAAAAAAATCAGCACGACTCCAGCACAAAAACGTTGATGCGGTGCCGCATTTCAGCCGCATAAAAAAACAGGCTGACCGCGTCAATCGATTTCCGGTACCGGAACTCGAGCCTTGAGCTCAAAAAATCATTCA                                                                                                                                                                                                                                     <  2:144225/251‑1                                          TGTGAAATTATTTAACATTATAACATGAATAAAAATTAATTCAATCGTATATTTAATATTTTTATTCATTTATAAATTTTCTGTTCAATGGGAATTCCGCTCAAAAAAAAATCAGCACGACTCCAGCACAAAAACGTTGATGCGGTGCCGCATTTCAGCCGCATAAAAAAACAGGCTGACCGCGTCAATCGATTTCCGGTACCGGAACTCGAGCCTTGAGCTCAAAAAATCATTCATCCGCAAGCCTTGC                                                                                                                                                                                                                       >  1:145846/1‑250                                                        ACATTATAACATGAATAAAAATTAATTCAATCGTATATTTAATATTTTTATTCATTTATAAATTTTCTGTTCAATGGGAATTCCGCTCAAAAAAAAATCAGCACGACTCCAGCACAAAAACGTTGATGCGGTGCCGCATTTCAGCCGCATAAAAAAACAGGCTGACCGCGTCAATCGATTTCCGGTACCGGAACTCGAGCCTTGAGCTCAAAAAATCATTCATCCGCAAGCCTTGCAGGGATGCTGTTTC                                                                                                                                                                                                         >  2:326596/1‑250                                                            TATAACATGAATAAAAATTAATTCAATCGTATATTTAATATTTTTATTCATTTATAAATTTTCTGTTCAATGGGAATTCCGCTCAAAAAAAAATCAGCACGACTCCAGCACAAAAACGTTGATGCGGTGCCGCATTTCAGCCGCATAAAAAAACAGGCTGACCGCGTCAATCGATTTCCGGTACCGGAACTCGAGCCTTGAGCTCAAAAAATCATTCATCCGCAAGCCTTGCAGGGATGCTGTTTCATTC                                                                                                                                                                                                     <  1:247568/250‑1                                                                  ATGAATAAAAATTAATTCAATCGTATATTTAATATTTTTATTCATTTATAAATTTTCTGTTCAATGGGAATTCCGCTCAAAAAAAAATCAGCACGACTCCAGCACAAAAACGTTGATGCGGTGCCGCATTTCAGCCGCATAAAAAAACAGGCTGACCGCGTCAATCGATTTCCGGTACCGGAACTCGAGCCTTGAGCTCAAAAAATCATTCATCCGCAAGCCTTGCAGGGATGCTGTTTCATTCGCTTAAA                                                                                                                                                                                              <  1:270466/251‑1                                                                                                                   AAATTTTCTGTTCAATGGGAATTCCGCTCAAAAAAAAATCAGCACGACTCCAGCACACACACGTTGATGCGGTGCCGCATTTCAGCCGCATAAAAAAACAGGCTGACCGCGTCCATCGATTTCCGGTCCCGGAACTCGCGCCTTGAGCTCCAAAAATCATTCATCCGCAAGCCTTTCCGGGATGCTGTTTCATTCGCTTACATAAATCCTCATAATACGGGTTTGCTGAGAGGCTTTACATTGAGGAcgcg                                                                                                                                             >  1:74441/1‑247                                                                                                                        TTCTGTTCAATGGGAATTCCGCTCAAAAAAAAATCAGCACGCCTCCAGCACAAAAACGTTGATGCGGTGCCGCATTTCAGCCGCATAAAAAAACAGGCTGACCGCGTCAATCGATTTCCGGTACCGGAACTCGAGCCTTGAGCTCAAAAAATCATTCATCCGCAAGCCTTGCAGGGATGCTGTTTCATTCGCTTAAATAAATCCTCATAATACGGGTTTGCTGAGAGGATTTACATTGAGGACGAGGACT                                                                                                                                         >  2:48082/1‑250                                                                                                                           TGTTCAATGGGAATTCCGCTCAAAAAAAAATCAGCACGACTCCAGCACAAAAACGTTGGTGCGGTGCCGCATTTCAGCCGCATAAAAAAACAGGCTGACCGCGTCAATCGATTTCCGGTACCGGAACTCGAGCCTTGAGCTCAAAAAATCATTCATACGCAAGCCTTGCAGGGATGCTGTTTCATTCGCTTAAATAAATCCTCATAATACGGGTTTGCTGAGAGGATTTACATTGAGGACGAGGACTATA                                                                                                                                      >  2:300751/1‑250                                                                                                                               CAATGGGAATTCCGCTCAAAAAAAAATCAGCACGACTCCAGCACAAAAACGTTGATGCGGTGCCGCATTTCAGCCGCATAAAAAAACAGGCTGACCGCGTCAATCGATTTCCGGTACCGGAACTCGAGCCTTGAGCTCAAAAAATCATTCATCCGCAAGCCTTGCAGGGATGCTGTTTCATTCGCTTAAATAAATCCTCATAATACGGGTTTGCTGAGAGGATTTACATTGAGGACGAGGACTATAATGA                                                                                                                                  >  2:62011/1‑250                                                                                                                                       ATTCCGCTCAAAAAAAAATCAGCACGACTCCAGCACAAAAACGTTGATGCGGTGCCGCATTTCAGCCGCATAAAAAAACAGGCTGACCGCGTCAATCGATTTCCGGTACCGGAACTCGAGCCTTGAGCTCAAAAAATCATTCATCCGCAAGCCTTGCAGGGATGCTGTTTCATTCGCTTAAATAAATCCTCATAATACGGGTTTGCTGAGAGGATTTACATTGAGGACGAGGACTATAATGAAAGCTATGA                                                                                                                         <  1:123721/251‑1                                                                                                                                           gctcaAAAAAAAA‑TCAGCACGACTCCAGCACAAAAACGTTGATGCGGTGCCGCATTTCAGCCGCATAAAAAAACAGGCTGACCGCGTCAATCGATTTCCGGTACCGGAACTCGAGCCTTGAGCTCAAAAAATCATTCATCCGCAAGCCTTGCAGGGATGCTGTTTCATTCGCTTAAATAAATCCTCATAATACGGGTTTGCTGAGAGGATTTACATTGAGGACGAGGACTATAATGAAAGCTATGAAAACC                                                                                                                    >  1:6687/6‑251                                                                                                                                              catAAAAAAA‑TCAGCACGACTACAGCACAAAAACGTTGATGCGGTGCCGCATTTCAGCCGCATAAAAAAACAGGCTGACCGCGTCAATCGATTTCCGGTACCGGAACGCGAGCCTTGAGCTCAAAAAATCATTCATCCGCAAGCCTTGCAGGGATGCTGTTTCATTCGCTTAAATAAATCCTCATAATACGGGTTTGCTGAGAGGATTTACATTGAGGACGAGGACTATAATTAAAGCTATGAAAACCT                                                                                                                   <  2:98543/246‑1                                                                                                                                                         TCAGCACGACTCCAGCACAAAAACGTTGATGCGGTGCCGCATTTCAGCCGCATAAAAAAACAGGCTGACCGCGTCAATCGATTTCCGGTACCGGAACTCGAGCCTTGAGCTCAAAAAATCATTCATCCGCAAGCCTTGCAGGGATGCTGTTTCATTCGCTTAAATAAATCCTCATAATACGGGTTTGCTGAGAGGATTTACATTGAGGACGAGGACTATAATGAAAGCTATGAAAACCTTCTCATAATACC                                                                                                       >  1:283349/1‑251                                                                                                                                                           AGCACGACTCCAGCACAAAAACGTTGATGCGGTGCCGCATTTCAGCCGCATAAAAAAACAGGCTGACCGCGTCAATCGATTTCCGGTACCGGAACTCGAGCCTTGAGCTCAAAAAATCATTCATCCGCAAGCCTTGCAGGGATGCTGTTTCATTCGCTTAAATAAATCCTCATAATACGGGTTTGCTGAGAGGATTTACATTGAGGACGAGGACTATAATGAAAGCTATGAAAACCTTCTCATAATACCCT                                                                                                     <  1:344949/251‑1                                                                                                                                                                                      TGCGGTGCCGCATTTCAGCCGCATAAAAAAACAGGCTGACCGCGTCAATCGATTTCCGGTACCGGAACTCGAGCCTTGAGCTCAAAAAATCATTCATCCGCAAGCCTTGCAGGGATGCTGTTTCATTCGCTTAAATAAATCCTCATAATACGGGTTTGCTGAGAGGATTTACATTGAGGACGAGGACTATAATGAAAGCTATGAAAACCTTCTCATAATACCCTCGTTTAGCATACAATAGCCCCTAACAT                                                                          >  1:345602/1‑251                                                                                                                                                                                                      AGCCGCATAAAAAAACAGGCTGACCGCGTCAATCGATTTCCGGTACCGGAACTCGAGCCTTGAGCTCAAAAAATCATTCATCCGCAAGCCTTGCAGGGATGCTGTTTCATTCGCTTAAATAAATCCTCATAATACGGGTTTGCTGAGAGGATTTACATTGAGGACGAGGACTATAATGAAAGCTATGAAAACCTTCTCATAATACCCTCGTTTAGCATACAATAGCCCCTAACATGTGTCAATCTGCTTA                                                           >  1:195538/1‑250                                                                                                                                                                                                              AAAAAAACAGGCTGACCGCGTCAATCGATTTCCGGTACCGGAACTCGAGCCTTGAGCTCAAAAAATCATTCATCCGCAAGCCTTGCAGGGATGCTGTTTCATTCGCTTAAATAAATCCTCATAATACGGGTTTGCTGAGAGGATTTACATTGAGGACGAGGACTATAATGAAAGCTATGAAAACCTTCTCATAATACCCTCGTTTAGCATACAATAGCCCCTAACATGTGTCAATCTGCTTAAAGTTAAA                                                   <  1:326596/250‑1                                                                                                                                                                                                                                               GGTACCGGAACTCGAGCCTTGAGCTCAAAAAATCATTCATCCGCAAGCCTTGCAGGGATGCTGTTTCATTCGCTTAAATAAATCCTCATAATACGGGTTTGCTGAGAGGATTTACATTGAGGACGAGGACTATAATGAAAGCTATGAAAACCTTCTCATAATACCCTCGTTTAGCATACAATAGCCCCTAACATGTGTCAATCTGCTTAAAGTTAAAAAACTTTTTATACTTTACGTCTCCACAGAATGTT                 <  1:48082/251‑1                                                                                                                                                                                                                                                GTACCGGAACTCGAGCCTTGAGCTCAAAAAATCATTCATCCGCAAGCCTTGCAGGGATGCTGTTTCATTCGCTTAAATAAATCCTCATAAGACGGGTTTGCTGAGAGGATTTACATTGAGGACGAGGACTATAATGAAAGCTATGAAAACCTTCTCATAATACCCTCGTTTAGCATACAATAGCCCCTAACATGTGTCAATCTGCTTAAAGTTAAAAAACGTTTTATCCGTTACGTCTCCACAGAATGTTC                <  2:313888/251‑1                                                                                                                                                                                                                                                           CGAGCCTTGAGCTCAAAAAATCATTCATCCGAAAGCCTTGCAGGGATGCTGTTTCATTCGCTTAAATAAATCCTCATAATACGGGTTTGCTGAGAGGATTTACATTGAGGACGAGGACTATAATGAAAGCTATGAAAACCTTCTCATAATACCCTCGTTTAGCATACAATAGCCCCTAACATGTGTCAATCTGCTTAAAGTTAAAAAACTTTTTATACTTTACGTCTCCACAGAATGTTCACATTTTCACC     >  1:245996/1‑251                                                                                                                                                                                                                                                               CCTTGAGCTCAAAAAATCATTCATCCGCAAGCCTTGCAGGGATGCTGTTTCATTCGCTTAAATAAATCCTCATAATACGGGTTTGCTGAGAGGATTTACATTGAGGACGAGGACTATAATGAAAGCTATGAAAACCTTCTCATAATACCCTCGTTTAGCATACAATAGCCCCTAACATGTGTCAATCTGCTTAAAGTTAAAAAACTTTTTATACTTTACGTCTCCACAGAATGTTCACATTTTCACCTAT  >  1:113824/1‑250                                                                                                                                                                                                                                     ||||||||||||||||||||||||||||||||||||                                                                                                                                                                                                                                                 TACAATTCCTATTTTCAAAACAAGTTCACCCTCTTGGTCTTTGTGAAATTATTTAACATTATAACATGAATAAAAATTAATTCAATCGTATATTTAATATTTTTATTCATTTATAAATTTTCTGTTCAATGGGAATTCCGCTCAAAAAAAA‑TCAGCACGACTCCAGCACAAAAACGTTGATGCGGTGCCGCATTTCAGCCGCATAAAAAAACAGGCTGACCGCGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000964/1195051‑1194825 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAAATCATTCATCCGCAAGCCTTGCAGGGATGCTGTTTCATTCGCTTAAATAAATCCTCATAATACGGGTTTGCTGAGAGGATTTACATTGAGGATGAGGACTATAATGAAAGCTATGAAAACCTTCTCATAATACCCTCGTTTAGCATACAATAGCCCCTAACATGTGTCAATCTGTTTAAAGTTAAAAAACTTTTTATACTTTACGTCTCCACAGAATGTTCACATTTTCACCTAT  >  NC_000964/3788113‑3788352

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.