New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000964	= 1153702	10 (0.260)	5 (0.140)	5/478	2.8	34.8%	intergenic (+81/‑87)	yisL/wprA	putative integral membrane protein/cell wall‑associated protease
	?	NC_000964	1153714 =	9 (0.240)					intergenic (+93/‑75)	yisL/wprA	putative integral membrane protein/cell wall‑associated protease

GAAAAAAGAAAAATCAACAGGAGGCCTGTGGGTCGGCTTCGTCATTGTCCTTTTGCTGACAGTGCTGCTCGGTCTGCATTTGCCAATTGGTTTTCAATTGTTTTAATAGAAAAACCTATGAACCCGGCTCTTTGATAGAGCTGGTTTTTTTTATATTTATCCCCTCATATTCCAAATCATTTAAAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000964/1153516‑1153702 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttaaaatTCCCTGTAAGCGGTATCTCGTCCTATGAAATTATGATACCTTCAAGGAGATTCATTATTTTGCAGGAGGGATAACATGAAACGCAGAAAATTCAGCTCGGTTGTGGCGGCAGTGCTTATTTTTGCACTGATTTTCAGCCTTTTTTCTCCGGGAACCAAAGCTGCAGCGGCCGGCGCGATCGATCAGGCGGCTGCTCTGGAAAACGGC  >  NC_000964/1153714‑1153920                                                                                                                                                                                                                                                                                                                                                                                                            GAAAAAAGAAAAATCAACAGGAGGCCTGTGGGTCGGCTTCGTCATTGTCCTTTTGCTGACAGTGCTGCTCGGTCTGCATTTGCCAATTGGTTTTCAATTGTTTTAATAGAAAAACCTATGAACCCGGCTCTTTGATAGAGCTGGTTTTTTTTATATTTATCCCCTCATATTCCAAATCATTTAAAATTCCCTGTAAGCGGTATCTCGTCCTATGAAATTATGATACCTTCAAGGAGATTCATTATTTTGC                                                                                                                                                  >  2:55737/1‑250            AATCAACAGGAGGCCTGTGGGTCGGCTTCGTCATTGTCCTTTTGCTGACAGTGCTGCTCGGTCTGCATTTGCCAATTGGTTTTCAATTGTTTTACTAGAAAAACCTATGAACCCGGCTCTTTGATAGAGCTGGTTTTTTTTATATTTATCCCCTCATATTCCAAATCATTTAAAATTCCCTGTAAGCGGTATCTCGTCCTATGAAATTATGATACCTTCAAGGAGATTCATTATTTTGCAGGAGGGATAAC                                                                                                                                      >  1:246922/1‑251                                                                GCTGCTCGGTCTGCATTTGCCAATTGGTTTTCAATTGTTTTAATAGAAAAACCTATGAACCCGGCTCTTTGATAGAGCTGGTTTTTTTTATATTTATCCCCTCATATTCCAAATCATTTAAAATTCCCTGTAAGCGGTATCTCGTCCTATGAAATTATGATACCTTCAAGGAGATTCATTATTTTGCAGGAGGGATAACATGAAACGCAGAAAATTCAGCTCGGTTGTGGCGGCAGTGCTTATTTTTGCAC                                                                                  <  1:271494/251‑1                                                                             CATTTGCCAATTGGTTTTCAATTGTTTTAATAGAAAAACCTATGAACCCGGCTCTTTGATAGAGCTGGTTTTTTTTATATTTATCCCCTCATATTCCAAATCATTTAAAATTCCCTGTAAGCGGTATCTCGTCCTATGAAATTATGATACCTTCAAGGAGATTCATTATTTTGCAGGAGGGATAACATGAAACGCAGAAAATTCAGCTCGGTTGTGGCGGCAGTGCTTATTTTTGCACTGATTTTCAGCCT                                                                     <  1:55737/251‑1                                                                                                                                                GTTTTTTTTATATTTATCCCCTCATATTCCAAATCATTTAAAATTCCCTGTAAGCGGTATCTCGTCCTATGAAATTATGATACCTTCAAGGAGATTCATTATTTTGCAGGAGGGATAACATGAAACGCAGAAAATTCAGCTCGGTTGTGGCGGCAGTGCTTAATTTTGCACTGATTTTAAGCCTTTTTTCTCCGGGAACCAAAGCTGCAGCGGCCGGCGCGATCGATCAGGCGGCTGCTCTTGAAAACGGC  >  1:332675/1‑251                                                                                                                                                                                                                                                                                                                                                                                                            GAAAAAAGAAAAATCAACAGGAGGCCTGTGGGTCGGCTTCGTCATTGTCCTTTTGCTGACAGTGCTGCTCGGTCTGCATTTGCCAATTGGTTTTCAATTGTTTTAATAGAAAAACCTATGAACCCGGCTCTTTGATAGAGCTGGTTTTTTTTATATTTATCCCCTCATATTCCAAATCATTTAAAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000964/1153516‑1153702 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttaaaatTCCCTGTAAGCGGTATCTCGTCCTATGAAATTATGATACCTTCAAGGAGATTCATTATTTTGCAGGAGGGATAACATGAAACGCAGAAAATTCAGCTCGGTTGTGGCGGCAGTGCTTATTTTTGCACTGATTTTCAGCCTTTTTTCTCCGGGAACCAAAGCTGCAGCGGCCGGCGCGATCGATCAGGCGGCTGCTCTGGAAAACGGC  >  NC_000964/1153714‑1153920

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.