| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000964 | 3,770,066 | (A)8→9 | intergenic (‑613/+38) | ywzE ← / ← csbD | conserved protein of unknown function (putative phage interference protein)/stress response protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000964 | 3,770,066 | 1 | . | A | 95.2% | 60.7 / ‑3.2 | 21 | intergenic (‑613/+38) | ywzE/csbD | conserved protein of unknown function (putative phage interference protein)/stress response protein |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base A (9/11); total (10/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.76e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.92e-01 | |||||||||||
TTGTGTCGATATCAACTGTTTTCTCGCACTCCCGTGGCTTCCGACACTTTCTTCGGTGCAGTACATTCCGTCATCAAAACCCCTTTGTTTGATTTCTTCAAATGATGTTATAAAAGTTTACAACTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGCGAAAAAAAA‑GACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGCCTTCAGCCTGCATGTCCGTTCTGTCAGCCATATCTCCGACTTTATCCTTCACTTCTCCTTTGGCTTTATTGAAGCCGCCCTTCATTTTGTCTTTTACACTATCGTTACCCATGTTAAT > NC_000964/3769820‑3770298 | ttGTGTAGATATCAACTGTTTTCTCGCACTCCCGTGGCTTCCGAAACTTTCTTCGGTGCAGTACATTCCGTCATCAAAACCCCTTTGTTTGATTTCTTCAAATGATGTTATAAAAGTTTACAACTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGCGaaaaaaaaagac > 2:342832/1‑247 (MQ=255) tttCTCGCACTCCCGTGGCTTCCGACACTTTCTTCGGTGCAGTACATTCCGTCATCAAAACCCCTTTGTTTGATTTCTTCAAATGATGTTATAAAAGTTTACAACTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGCAAAAGCGAAAAAAAAAGACAAGAAACATTTCGTTTCCt > 2:275858/1‑251 (MQ=255) cGTGGCTTCCGACACTTTCTTCGGTGCAGTACATTCCGTCATCAAAACCCCTTTGTTTGATTTCTTCAAATGATGTTATAAAAGTTTACAACTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGCGAAAAAAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTAc < 2:142946/251‑1 (MQ=255) tCCGACACTTTCTTCGGTGCAGTACATTCCGTCATCAAAACCCCTTTGTTTGATTTCTTCAAATGATGTTATAAAAGTTTACAACTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGCGAAAAAAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTa < 1:278116/249‑1 (MQ=255) tcAGTACATTCCGTCATCCAAAACCCTTTGTTTGATTTATTCAAATGATGTTATAAAAGTTTACACCTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGCGAAAAAAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCATACGATTAATCTTTATCTGAAAAtttct > 2:52221/2‑249 (MQ=255) cccTTTGTTTGATTTCTTCAAATGATGTTATAAAAGTTTACAACTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGCGAAAAAAAAAGACAATAACCCTTTCGTTTCCTGCCTCTTCCTTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCttt < 1:278720/251‑1 (MQ=255) aaaTGATGTTATAAAAGTTTACAACTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGCGAAAAAAAA‑GACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCtt > 2:177616/1‑251 (MQ=255) ataAAAGTTTACAACTTATGTCATCATTATATAGAAGAGGCCTATTAATTAAAAGAATATTTAAAAAATTTAGTTAGCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATGAGAACAAGCGAAAAAAAAAGACAAGAAACATTTCGTTCCCGGCATCTGCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTACCCGCTAGCCTGTTGGATTGCGCCTTTTGCCTTATCttttt < 2:111679/250‑1 (MQ=255) aaaGTTTACAACTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGCGAAAAAAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGcc > 1:304750/1‑251 (MQ=255) gTTTACAACTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGCGAAAAAAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGCCTTc < 1:192990/251‑1 (MQ=255) aaCTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTGTTTTTGTTATATTTATTCACATCAGAAAAAGCGAAAAAAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGCCTTCAGCCTg < 2:225185/251‑1 (MQ=255) tCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGCGAAAAAAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGCCTTCAGCCTGCATGTCCGTTCTGTCAGCCATATCTCCGACTTTATcc > 1:153275/1‑251 (MQ=255) aGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGCGAAAAAAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGCCTTCAGCCTGCATGTCCGTTCTGTCAGCCATATCTCCGACTTTATCCTTcc > 1:327895/1‑250 (MQ=255) aaTTTAGTTACCTTGACCAAATCAGCTGCTTTTTTTGTTATATTTATTCACATCAGAAAAAGCGAAAAAAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGCCTTCAGCCTGCATGTCCGTTCTGTCAGCCATATCTCCGACTTTATCCTTCACTGCGCCTTTGGc < 2:221172/251‑1 (MQ=255) ccTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGCGAAAAAAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGCCTTCAGCCTGCATGTCCGTTCTGTCAGCCATATCTCCGACTTTATCCTTCACTTCTCCTTTGGCTTTATTGAAg < 2:159781/251‑1 (MQ=255) aaaTCAGCGTCTTTTTTTGTGATATTTATACCCATCAAAAAAAGCAAAAAAAAAAGACAAGAAACAGTTCTTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGTATTTCGCCTTTTGCCTTATCTTTTTTGCCTTCAGCCTGCATGTCCGTTCAGTCAGCCATATCTCCGACTGTATCCTTCACTTCTCCTTTGGCTTTATTCAAgccgccgtt < 2:208283/251‑4 (MQ=255) aaTCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGCGAAAAAAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGCCTTCAGCCTGCATGTCCGTTCTGTCAGCCATATCTCCGACTTTATCCTTCACTTCTCCTTTGGCTTTATTGAAGCCGCCCTTc > 2:44056/1‑251 (MQ=255) ttGTTATATTTATTCACATCAGAAAAAGCGAAAAAAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGCCTTCAGCCTGCATGTCCGTTCTGTCAGCCATATCTCCGACTTTATCCTTCACTTCTCCTTTGGCTTTATTGAAGCCGCCCTTCATTTTGTCTTTTac > 2:120013/1‑250 (MQ=255) atttattCACATCAGAAAAAGCGAAAAAAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGCCTTCAGCCTGCATGTCCGTTCTGTCAGCCATATCTCCGACTTTATCCTTCACTTCTCCTTTGGCTTTATTGAAGCCGCCCTTCATTTTGTCTTTTACACTATCGt > 1:330825/1‑251 (MQ=255) ctgAAAAAGCGAAAAAAAAATACAAGAAACATTTCTTTTCCTGCCTCTTCCGTTCGTTGAATCTTTATCTGAAAATTTTTCCTTGTCTTTCCCGATATCCTTTTGGTTTTCGCCTTGTGCCTTATCTTTTTTGCCTGCAGCCTGCATGTCCGTTCTGTCAACCATATCTCCTACTTTATCCTCCTCTTCTCCTTTGGCTTTATTTAAGCCGCCCTTCATTTTGTCTTTTACACTATCGTTACCCATGtt < 2:129058/247‑1 (MQ=255) cAGAAAAAGCGAAAAAAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGCCTTCAGCCTGCATGTCCGTTCTGTCAGCCATATCTCCGACTTTATCCTTCACTTCTCCTTTGGCTTTATTGAAGCCGCCCTTCATTTTGTCTTTTACACTATCGTTACCCATGTTa > 2:114377/1‑250 (MQ=255) aGAAAAAGCGAAAAAAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGCCTTCAGCCTGCATGTCCGTTCTGTCAGCCATATCTCCGACTTTATCCTTCACTTCTCCTTTGGCTTTATTGAAGCCGCCCTTCATTTTGTCTTTTACACTATCGTTACCCATGTTAAt < 1:259703/251‑1 (MQ=255) | TTGTGTCGATATCAACTGTTTTCTCGCACTCCCGTGGCTTCCGACACTTTCTTCGGTGCAGTACATTCCGTCATCAAAACCCCTTTGTTTGATTTCTTCAAATGATGTTATAAAAGTTTACAACTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGCGAAAAAAAA‑GACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGCCTTCAGCCTGCATGTCCGTTCTGTCAGCCATATCTCCGACTTTATCCTTCACTTCTCCTTTGGCTTTATTGAAGCCGCCCTTCATTTTGTCTTTTACACTATCGTTACCCATGTTAAT > NC_000964/3769820‑3770298 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |