| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000964 | 1,317,158 | (T)5→6 | coding (257/258 nt) | yjpA ← | putative enzyme |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000964 | 1,317,158 | 1 | . | T | 93.5% | 109.0 / ‑0.2 | 31 | coding (257/258 nt) | yjpA | putative enzyme |
| Reads supporting (aligned to +/- strand): ref base . (0/2); new base T (17/12); total (17/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.96e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.82e-01 | |||||||||||
ACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATTGTTTATATGAAATCTAAATGGATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGG‑‑CT‑TTTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTGGCGTCGCTGAATGGCCCAAACATTTTTAAACGTTTTTCTGCCTGTAAACGATCCAGAAATTCATAGTGCCCAGCCACATGCTCCTGATTAAATTTCTCCGTTCTCATTGTCAGCATTAAA > NC_000964/1316918‑1317403 | aCAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATTGTTTATATGAAATCTAAATGGATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCT‑TTTTTATttctt < 2:164260/251‑1 (MQ=255) aGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATTGTTTATATGAAATCTAAATGGATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCT‑TTTTTATttcttc > 2:60070/1‑250 (MQ=255) ccGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATTGTTTATATGAAATCTAAATGGATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCT‑TTTTTATTTCTTCAGCt > 2:57793/1‑251 (MQ=255) gCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATTGTTTATATGAAATCTAAATGGATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCT‑TTTTTATTTCTTCAGCTTCCATTCt < 1:57793/251‑1 (MQ=255) tttCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATTGTTTATATGAAATCTAAATGGATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGCCT‑TTTTTATTTCTTCAGCTTCCATTCtttt > 1:267634/1‑250 (MQ=255) aTGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATTGTTTATATGAAATCTAAATGGATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCT‑TTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGc < 1:344870/250‑1 (MQ=255) gaAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATTGTTTATATGAAATCTAAATGGATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCT‑TTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTc > 2:113211/1‑248 (MQ=255) ggTGCTCGCACAAAGACTAATCCAGAGTGGAGCGTGATTAGATGAAATCTAAAAGGATGTCAGGATTGTGGCTAGTTGCGGGCGGGTTTAGCTTTACTCAGGTGATGGTTCATGCAGGTCAAGCATGAAACACAGAATGGAAAACAGGGCATATGGCGGCTTGTAATCAAACATCTTGCATAAAAATATCCCCTTAGGGGTCTGTGTT‑ATTTCTGCAGCGTCCATTcgcttaacggcagttcggaagaac < 2:94619/250‑24 (MQ=255) aaaTCCAGAGAGGAGATTGTTTATATTAAATCTAAATTGATGTCAGGTTTGTTGCTCGTTGCGGGCGGGTTCAGATTGACTCAGGTGATGGTTTATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCT‑TTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCACAGAAGATCCACTTGCCTCCATCGGAt < 1:324007/251‑1 (MQ=255) gagagGAGATTGTTTATATGAAATCTAAATGGATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCT‑TTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATg > 1:53691/1‑251 (MQ=255) agagGAGCTTGTTTATATGAAATCTAAATGGATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGCGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCT‑TTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATgg > 2:286203/1‑251 (MQ=255) tGTTTATATGAAATCTAAATGGATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCT‑TTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTc < 1:96748/250‑1 (MQ=255) gAAATCTAAATGGATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCT‑TTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCctct > 2:193439/1‑251 (MQ=255) aaaTGGATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCT‑TTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAg < 1:113211/249‑1 (MQ=255) aaTGGATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCT‑TTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGa < 1:286203/251‑1 (MQ=255) gTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGGCT‑TTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCt > 1:341763/1‑251 (MQ=255) ggTTTGTTGCTCGTTGCGGTCGGGTTCGGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCT‑TTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCg > 2:330995/1‑250 (MQ=255) gTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCT‑TTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGAt > 2:145705/1‑251 (MQ=255) tttGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCT‑TTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATg > 2:115644/1‑251 (MQ=255) gCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCT‑TTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGc < 2:206306/251‑1 (MQ=255) ggTTCAGCTTGACACAGGTGATGGTTCAGGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGAAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCT‑TTTTTATTTCTTCAGCTTCCATTCGTTTAGCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTCAATCTGCTTCGATGACATACGCTCCGCCTGTGGc < 2:310810/251‑1 (MQ=255) tACTCAGGTGATGGTTCATGCAGGGGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGAACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCT‑TTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGATTCTGCTTCGATGACATACGCTCCGCCTGTGGCGTCGATGAAt > 2:284922/1‑251 (MQ=255) aGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCT‑TTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTGGCGTCGCTGAATGGccc < 1:68119/251‑1 (MQ=255) aGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCT‑TTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTGGCGTCGCTGAATGGCCCAAACATTTTTAAACGt < 1:193439/251‑1 (MQ=255) cacaGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCT‑TTTTTATTTCTTCATCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTTCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTGGCTTCGCTGAATGGCCCAAACATTTTTAAACGTTTTTCTGCCTGTaa > 2:183604/1‑250 (MQ=255) aGAAGGGAAAACATTTCATATTGCGGCACACAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCT‑TTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTGGCGTCGCTGAATGGCCCAAACATTTTTAAACGTTTTTCTGCCTGTAAACGa < 1:114968/251‑1 (MQ=255) gAAGGGAAAACATTTCATATTTCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTGTTTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTGGCGTCGCTGAATGGCCCAAACATTTTTAAACGTTTTTCTGCCGGTAAACGAt < 2:72835/251‑1 (MQ=255) aaaCATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCATTAGGGGTCT‑TTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTGGCTTCGCTGAATGGCCCAAACATTTTTAAAAGTTTTTCTGCCTGTAAACGATCCAGaa > 2:14423/1‑250 (MQ=255) aaaTCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCT‑TTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTGGCGTCGCTGAATGGCCCAAACATTTTTAAACGTTTTTCTGCCTGTAAACGATCCAGAAATTCATAGTGCCCAGCCACATGc > 2:330182/2‑251 (MQ=255) gCATAAAAAAAGACCCTTAGGGGTCT‑TTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTGGCGTCGCTGAATGGCCCAAACATTTTTAAACGTTTTTCTGCCTGTAAACGATCCAGAAATTCATAGTGCCCAGCCACATGCTCCTGATTAAAttt > 1:307197/1‑251 (MQ=255) aaaaaaGACCCTTAGGGGTCT‑TTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTGGCGTCGCTGAATGGCCCAAACATTTTTAAACGTTTTTCTGCCTGTAAACGATCCAGAAATTCATAGTGCCCAGCCACATGCTCCTGATTAAATTTCTCCg > 1:330501/1‑251 (MQ=255) cccttaggggtctt‑tttt‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATATGCTTCGATGACATACGCTCCGCCTGTGGCGTCGCAGAATGGCCCAAACATTTTTAAACGTTTTTCTGCCTGTACACGATCCAGAAATTCATAGTGCCCAGCCACATGCTCCTGATTAAATTTCTCCGTTCTCAtt > 2:253541/14‑251 (MQ=255) taggggtctt‑tttt‑ATTTCTTCAGCTTCCATTCTTTTATCGGAAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTGGCGTCGCTGAATGGCCCAAACATTTTGAAACGTTTTTCTGCCTGTAAACGATCCAGAAATTCATAGTGCCCAGCCACATGCTCCTGATTAAATTTCTCCGGTCTCATTGTc < 2:278427/241‑1 (MQ=255) ggggtctt‑tttt‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCct > 2:148486/8‑96 (MQ=255) ggggtctt‑tttt‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCct < 1:148486/89‑1 (MQ=255) ggggtctt‑tttt‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTGGCGTCGCTGAATGGCCCAAACATTTTTAAACGTTTTTCTGCCTGTAAACGATCCAGAAATTCATAGTGCCCAGCCACATGCTCCTGATTAAATTTCTCCGTTCTCATTGTCAGc > 1:214879/8‑251 (MQ=255) t‑tttt‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTGGCGTCGCTGAATGGCCCAAACATTTTTAAACGTTTTTCTGCCTGTAAACGATCCAGAAATTCATAGTGCCCAGCCACATGCTCCTGATTAAATTTCTCCGTTCTCATTGTCAGCATTaaa < 1:175720/250‑1 (MQ=255) | ACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATTGTTTATATGAAATCTAAATGGATGTCAGGTTTGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGG‑‑CT‑TTTT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTCCGCCTGTGGCGTCGCTGAATGGCCCAAACATTTTTAAACGTTTTTCTGCCTGTAAACGATCCAGAAATTCATAGTGCCCAGCCACATGCTCCTGATTAAATTTCTCCGTTCTCATTGTCAGCATTAAA > NC_000964/1316918‑1317403 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |