Strain - Detail -
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Strain Distribution
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Strain No.
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NIES-2565
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Institution name
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National Institute for Environmental Studies
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Phylum
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Heterokontophyta
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Class
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Bolidophyceae
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Order
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Family
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Scientific name
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Triparma laevis B.C.Booth f. inornata S.Konno, R.Ohira, C.Komuro, N.Harada, & R.W.Jordan
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Synonym
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Common name
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Locality（Date of collection）
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Japan
Pacific Ocean (Oyashio region) (Depth -80m)
(2008-07-20)
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Collector name
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Habitat(Isolation source)
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Marine
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Details of habitats
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Depth(-80m) Pelagic
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Isolator(Date of isolation)
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Ichinomiya, Mutsuo
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Identified by
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Ichinomiya, Mutsuo
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State of strain
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Unialgal; Axenic[2021 Jun]
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Preservation state
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Subculture
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Freeze Preservation
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Uncertain
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Culture condition(Preculture condition)
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Medium:ESM
Medium form:Liquid
Temperature:5
℃
Light intensity:45-55
μmol phtons/m2/sec
L/D cycle:10L:14D
Duration:1 M
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Gene information
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16S rRNA
(LN735526
)
18S rRNA
(AB546639
)
ITS-1-5.8S-ITS2
(KR998385
)
nadH1
(KR998404
)
rbcL
(AB546640
)
Whole-genome
(BLQM00000000
)
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Image
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Characteristics
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Genome decoded strain (Kuwata et al. 2020; Ban et al. 2023); Siliceous, Non-flagellated stage[2018 May]
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Cell size(min-max)
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Organization
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Remarks
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Axenic; Fragile species to transportation stresses; Fragile species to temperature changes; Read and agree "How to order 4.1"
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Reference
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Ichinomiya, M., Yoshikawa, S., Kmiya, M., Ohki, K., Takaichi, S., Kuwata, A.:
2011:
Isolation and characterization of Parmales (Heterokonta/Heterokontophyta/Stramenopiles) from the Oyashio region, Western North Pacific.:
J. Phycol.,
47,
144-151.
Strains:
2565
2682
Ichinomiya, M., Nakamachi, M., Shimizu, Y., Kuwata, A.:
2013:
Growth characteristics and vertical distribution of Triparma laevis (Parmales) during summer in the Oyashio region, western North Pacific.:
Aquat. Microb. Ecol.,
68,
107-116.
Strains:
2565
Yamada, K., Yoshikawa, S., Ichinomiya, M., Kuwata, A., Kamiya, M., Ohki, K.:
2014:
Effects of silicon-limitation on growth and morphology of Triparma laevis NIES-2565 (Parmales, Heterokontophyta).:
PLoS One,
9,
e103289 (article ID).
Strains:
2565
Ichinomiya, M., Lopes dos Santos, A., Gourvil, P., Yoshikawa, S., Kamiya, M., Ohki, K., Audic, S., De Vargas, C., Noël, M. H., Vaulot, D., Kuwata, A.:
2016:
Diversity and oceanic distribution of the Parmales (Bolidophyceae), a picoplanktonic group closely related to diatoms.:
ISME J.,
10,
2419-2434.
Strains:
2565
2682
3369
3370
3371
3699
3700
3701
Yamada, K., Nagasato, C., Motomura, T., Ichinomiya, M., Kuwata, A., Kamiya, M., Ohki, K., Yoshikawa, S.:
2017:
Mitotic spindle formation in Triparma laevis NIES-2565 (Parmales, Heterokontophyta).:
Protoplasma,
254,
461-471.
Strains:
2565
Tajima, N., Saitoh, K., Sato, S., Maruyama, F., Ichinomiya, M.,Yoshikawa, S., Kurokawa, K., Ohta, H., Tabata, S., Kuwata, A., Sato, N.:
2016:
Sequencing and analysis of the complete organellar genomes of Parmales, a closely related group to Bacillariophyta (diatoms).:
Curr. Genet.,
62,
887-896.
Strains:
2565
Decelle, J., Romac, S., Stern, R. F., Bendif, E., Zingone, A., Audic, S., Guiry, M. D., Guillou, L., Tessier, D., Le Gall, F., Gourvil, P., Dos Santos, A. L., Probert, I., Vaulot, D., de Vargas, C., Christen, R.:
2015:
PhytoREF: a reference database of the plastidial 16S rRNAgene of photosynthetic eukaryotes with curated taxonomy.:
Mol. Ecol. Resour.,
15,
1435-1445.
Strains:
763
764
2565
Yamada, K., Yoshikawa, S., Ohki, K., Ichinomiya, M., Kuwata, K., Motomura, T., Nagasato, C.:
2016:
Ultrastructural analysis of siliceous cell wall regeneration in the stramenopile Triparma laevis (Parmales, Bolidophyceae).:
Phycologia,
55,
602-609.
Strains:
2565
Yamada, K., Katsura, H., Noël, M.-H., Ichinomiya, M., Kuwata, A., Sato, S., Yoshikawa, S.:
2019:
Ontogenetic analysis of siliceous cell wall formation in Triparma laevis f. inornata (Parmales, Stramenopiles).:
J. Phycol.,
55,
196-203.
Strains:
2565
Kuwata, A., Yamada, K., Ichinomiya, M., Yoshikawa, S., Tragin, M., Vaulot, D., Lopes dos Santos, A.:
2018:
Bolidophyceae, a sister picoplanktonic group of diatoms – a review.:
Front. Mar. Sci.,
5,
370 (article ID).
Strains:
2565
2682
3369
3370
3371
3699
3700
3701
Kuwata, A., Saitoh, K., Nakamura, Y., Ishinomiya, M., Sato, N.:
2020:
Draft whole-genome sequence of Triparma laevis f. inornata (Parmales, Bolidophyceae), isolated from the Oyashio region, Western North Pacific Ocean.:
Microbiol. Resour. Ann..,
9,
e00367-20 (article ID).
Strains:
2565
Ban, H., Sato, S., Yoshikawa, S., Yamada, K., Nakamura, Y., Ichinomiya, M., Sato, N., Blanc-Mathieu, R., Endo, H., Kuwata, A., Ogata, H.:
2023:
Genome analysis of Parmales, the sister group of diatoms, reveals the evolutionary specialization of diatoms from phago-mixotrophs to photoautotrophs.:
Commun. Biol.,
6,
697 (article ID).
Strains:
2565
3699
3700
3701
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