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Gene list

Gene name Related strains
14-3-3 protein
1
1506 group I intron
2
16S rRNA
484
16S rRNA, tRNA-Ile
1
16S, 16S-IRS-23S
1
16S-23S ITS
1
16S-23S rRNA
2
16S-23S-ITS
6
16S-ITS
2
16S-ITS-23
1
16S-ITS-23S
17
16S-ITS-23S-5S
3
16S-ITS1-tRNA-Ile-tRNA-Ala-23S
4
16S-tRNA-Ile-tRNA-Ala-23S
2
18S rDN
1
18S rRNA
703
18S-ITS1-5.8S
5
18S-ITS1-5.8S-ITS2
20
18S-ITS1-5.8S-ITS2-26S
9
18S-ITS1-5.8S-ITS2-28S
134
23S rRNA
62
26S rRNA
29
26S rRNA,
1
28S rDNA
2
28S rRNA
92
28S-ITS
6
3-isopropylmalate isomerase/dehydratase small subunit gene
1
5.8S rRNA
1
5.8S-ITS2
1
5.8S-ITS2-26S
1
5.8S-ITS2-28S
48
5S rRNA
1
AB973458
1
Amt protein mRNA(putative)
1
BAC paired-end sequences
1
BTA1L mRNA
1
BTA1S mRNA
1
CAH1
1
CAH2
1
CALM
1
CAO
2
CCT
1
CCT1 mRNA
1
CKI
1
CMK
1
CO1
84
CO1b, atp4
7
CO2
4
CO2, CCO1
1
CO2, CO1
13
CO3
12
CRISPR, ISMae21, ISMae22
1
CSAP-1
1
CSAP-2
1
CaAUREO1 mRNA
1
CeRLK1
1
CeRLK10
1
CeRLK11
1
CeRLK12
1
CeRLK13
1
CeRLK14
1
CeRLK2
1
CeRLK3
1
CeRLK4
1
CeRLK5
1
CeRLK6
1
CeRLK7
1
CeRLK8
1
CeRLK9
1
Chromosome unassigned contigs
3
CpCAB1
1
CpHSP70
1
CpMADS1 mRNA
2
CpMXIa mRNA
1
CpMXIb mRNA
1
CpMXIc mRNA
2
CpPI mRNA
2
CpPI-kd01
1
CpPI-kd02
1
CpPI-kd03
1
CpPI-kd04
1
CpPI-kd05
1
CpcB, CpcA
1
CrDES
1
CvFAD2 mRNA
1
CvFad3
1
CypA
1
DHOD
1
DNA
2
DXR
1
DXS
1
DnaK
1
Dps family protein
4
ECT
2
EF-1 like
1
EF-1A mRNA
3
EF-1alpha-like
2
EF-3
1
EF2
1
EFL
1
EFL mRNA
1
EKI
2
EPT
1
EST information
1
ESTs(cDNA)
2
EhPEPC
1
EhPYC
1
EhSEP2
1
FCP
1
FUS1
3
Fosmid paired-end sequences
1
FtsQ-FtsZ
1
G6PDH mRNA
1
GAPDH
4
GCS1
1
GapC1
5
GapC2
3
Genome
1
HDR
1
HDS
1
HMGR
1
HMGS
1
HiC12 mRNA
1
Hsp70
3
Hsp90
5
ITA1-5.8S-ITS2
1
ITS
13
ITS rRNA
10
ITS-1-5.8S-ITS2
5
ITS-2
6
ITS-5.8S-ITS2
3
ITS-5.8S-ITS2-28S
1
ITS1
5
ITS1-5.6S-ITS2
1
ITS1-5.8S-ITS-26S
1
ITS1-5.8S-ITS2
87
ITS1-5.8S-ITS2-28S
33
ITS2
21
KfSPP
1
L12
1
LASP1
1
LSU rRNA
1
MCT mRNA
1
MDD
1
MECPS
1
MID
22
MS
1
MTD1
1
Mitochondria DNA
14
Mitochondrial DNA
22
Mitochondrial genome
1
NIT1
6
NIT2
6
NSG1
1
NSG11
1
NSG13
1
NSG17
1
NSG6
1
NSG7
1
NbftsZ2
1
NbrbcL
1
NbrbcS2, Akl, NbSep, PABP1
1
NbrbcSl-2, GAMMl, Mut2
1
NoNR mRNA
1
NoPHT1a mRNA
1
NoPHT1b mRNA
1
NoPHT1c mRNA
1
NoPSL1 mRNA
1
NoPSL2 mRNA
1
NoPSR1 mRNA
1
Nuclear DNA (chromosome 1-20)
5
Nuclear actin
3
Nuclear actin-1
2
Nuclear actin-2
2
Nuclear genome
1
Nucleomorph actin
2
OAA
1
OPRT-OMPDC
1
PAC1
2
PAC2
2
PEAMT
1
PEAMT mRNA
1
PECT1 mRNA
1
PLMT
1
PPT
1
PR-IP
1
PR-IP(two subunits)
1
PRK
1
PRP4
3
PRX1
3
Pcy
2
Plasmid DNA
25
Plastid DNA
42
Plastid genome
2
Plastid genomes
4
Plastid minicircle sequences
1
PlestMID
3
PlestMID cDNA
2
PsbN
1
RECA
1
RPB
1
RPB1
2
Rab1
1
Rab11
1
Rac1
1
RecG, NbrbcS1-1
1
Root cap protein 1-8 mRNAs
1
RpS8b
2
SIG1 mRNA
1
Sc343
1
SiTl1
1
TDH
1
TPI
2
TPI-GAPDH
2
Total genome information
1
Ura3
1
V4 psbM-rps14 intergenic spacer
1
V4 tufA-trnV intergenic spacer
1
VARL domain protein
1
VatA
2
VatB
2
Whole-genome
119
ac1
1
act
3
act1
14
act2
2
actin
12
actin-1
1
actin-2
1
actin1
1
aerA
1
aerA-aerB
1
aladh
2
alpha-tubulin
4
apcB
1
atc1
1
atpA
8
atpB
165
atpB, atpB-rbcL IGS, rbcL
7
atpC
2
atpE
2
atpF
1
atpH
1
atpI
1
atub
4
atun
1
beta-carotene ketolase
1
beta-tubulin
11
bkt3
1
btub
2
ca1
1
cas2
3
ccsA
1
cdip-1 mRNA
1
cfxQ
1
chlB
1
chloroplast phosphoribulokinas
1
chromosome ubassaugned contigs
1
clpB
1
clpB, hps, hpsE, hpsF, hpsG1, hpsG2, hpsG3, hpsG4, ORF303, ORF297, htpG, hpsA, hpsB, hpsD, hpsH
1
clpP
1
cob
10
cox1b, atp4
3
cox2a
1
cpcB
1
cpcB, cpcA
15
cpcB-cpcA
1
cpcBA-IGS
33
crtB
1
cyaA
1
cyaC
1
cyaG
1
cyanelle
1
dam
1
dnaJ
1
dnaK1
1
dnaK3
1
dnaN
1
dnaN, trp2, mcyJ
1
eEF-2
1
endogenous viral fragment
1
eno
1
fbaC1mRNA
1
ftsZ
100
ftsZ2
1
gapC
1
gapC1
1
geoA
2
glnA
125
gltX
118
glycine cleavage system protein H gene
1
gnd
3
gp40-1
1
gp40-2
1
groEL
3
groES
1
groES, groEL
3
grpE
1
gyrB
131
hiC6
1
hmpABCDE
1
hpsI
1
hpsJ/K
1
hrcA
1
hsp20-1
1
hsp70-E
1
hsp90
5
hypX, uma1
1
hypothetical protein
2
hypothetical protein gene, rlsC, rlsO, rlsB, regA, rlsA, ackB, rlsD
1
idi
1
ispA
1
lycopene beta-cyclase
1
mRNA for sedolisin-like peptidase
1
mat mRNA
1
mat3
13
mating locus
4
mcaA
1
mcnC, mcnE
3
mcnC-mcnE
1
mcyA
8
mcyA-mcyD
1
mcyB
2
mcyD
33
mcyE
6
mcyG
32
mcyJ
34
mdnA
3
mdnB
6
metE mRNA
1
mib
1
mic
4
mmp1
1
mmp2
1
mmp3
1
mth
1
mysA, mysB, mysC, mysD
1
mysC, mysB, mysA
1
mysD
1
nad1
1
nad11
1
nad5
1
nad6
1
nad6, nad5
1
nad7
1
nadH1
7
nbact
1
nearly complete genome
9
nifH
2
nitrate transporter gene
1
non-selective channel of thylakoid membrane
1
nrtP
4
ociD
1
odbgp
1
papC1
1
papC2
1
pasB
1
pcB, pcA
3
pcB-pcA
3
pcb, pca
2
pdk
1
petA
2
petB
52
petC
1
petD
6
petH
5
pgi
116
pgk
2
pgmtc
1
pgmtf
1
pilT
1
pirE
1
plasmid DNA
2
plasmid p1
1
plastid DNA
16
pmSL1
1
polyubiquitin
1
prenylagaramide gene
1
promoter region between mcyA and mcyD
2
psaA
110
psaB
180
psab
1
psbA
29
psbB
4
psbC
128
psbC, psaD, petB, petD, ycf12, ycf9, ycf47
1
psbD
4
psbF
1
psbH-psaA intergenic spacer region
4
psbK
1
psbL
1
psbO
14
psbZ
1
rbCL
1
rbc
1
rbcL
421
rbcL, rbcS, cfxQ, psbA
1
rbcL, rbcX
1
rbcL, rbcX, rbcS
2
rbcL-462 intron
4
rbcL-rbcS spacer
1
rbcS
3
recA
112
regA
2
rlsA, regA, rlsB, rlsC
1
rlsE, HCP, rlsG
1
rlsF
1
rlsH
1
rlsI
1
rlsJ
1
rlsL
1
rlsM
1
rpl16
2
rpl2
1
rpl23, rpl2
1
rpoB
3
rpoC1
45
rpoD1
11
rps14
2
rrnL3
1
rrnL7, rrnS2, nad1
1
scdip-1mRNA
1
sex determining region
3
sfa
1
sodF
2
sppA
1
spsA
1
susA
1
tpi
102
transcriptome
3
translation elongation factor 1 alpha
1
treH
1
treZ, treY, treH
1
trnE, trn
1
trnE, trnS
4
trnF, psaC
1
trnG
1
trnL
1
trnN, trnI, trnL, rps12
5
tufA
11
vppa
1
wspA
3
ycf12
1
ycf24
1
ycf3
1
ycf31, petG, psbK, psaI, psbD
1
ycf4
1
ycf5, psaC, ycf35, psbA
1
ycf6, trnD, trnI, ycf33, trnT, ycf25
1
ypt4
5