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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

Wh_KMV_all.Contig2558
Contig Information
Length 2235 bp
Tissue Shoot grown with continuous light after cold treatment
Clones 26 Clones [Download: CSV  ,  FASTA ]
whkv10g19    whkv1l05    whkv2f10    whkv4f06    whkv7m05    whkv8c06    whkv14b09    whkv15j23    whkv16g07    whkv16g08    whkv16m21    whkv16p19    whkv19p13    whkv20m03    rwhkv10g19    rwhkv1l05    rwhkv2f10    rwhkv4f06    rwhkv7m05    rwhkv14b09    rwhkv15j23    rwhkv16g07    rwhkv16g08    rwhkv16p19    rwhkv19p13    rwhkv20m03   
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit Os03g0821100 [Oryza sativa (japonica cultivar-group)] >gi|29124135|gb|AAO65876.1| heat shock protein cognate 70 [Oryza sativa (japonica cultivar-group)] >gi|108711797|gb|ABF99592.1| Heat shock cognate 70 kDa protein 2, putative, expressed [Oryza sativa (japonica cultivar-group)] >gi|113550195|dbj|BAF13638.1| Os03g0821100 [Oryza sativa (japonica cultivar-group)] >gi|125588425|gb|EAZ29089.1| hypothetical protein OsJ_012572 [Oryza sativa (japonica cultivar-group)] >gi|215697587|dbj|BAG91581.1| unnamed protein product [Oryza sativa Japonica Group]
Score 3062
Evalue 0
Total Hit Count 500
Registered year 2003
Contig Sequence     [ Download ]
>Wh_KMV_all.Contig2558 
TTTTTTTTTTAGTCCAAATAATAAGCATTAAGCTGAAATCAACAATGAGCCAAAACATGCATCATTGCATTGTTCACGACACACACAAGTCTCGTGATGC
TACAGACCAAAAAGTACAACAAAACTTCCAGCCCAGGTGATATGATTGGCACCCAGGACTGAATAAAATGGTGTATAGTGTATTTCTCACTATATAAAAG
CGACTAACTTAGTCGACCTCCTCGATCTTGGGGCCAGCACCGCCGCTCGCAGCCGGCGCGTCCTCGTCCATGCCTCCGGGCATGTCAGCACCGGCGCCCT
GGTACATCTTGGCGATGATGGGGTTGCAGAGGCCCTCCAGCTCCTTCATCTTGTCCTCAAACTCGTCAACCTCACCGAGCTGGTTGGCGTCAAGCCACTG
GATCGCGGCGTCAACGGCGTCCTCGATCTTCTTCTTGTCATCAGCAGGCAGCTTGGAGGCGATCTTCTCGTCCTGGATGGTGTTCCTCATGTTGTAGGCG
TAGTTCTCCAGGGAGTTCTTGGCGTCAACCTTCTTCTTGTGCTCCTCGTCCTCAGACTTGTACTTCTCTGCGTCCTGGACCATCTTCTCAATGTCGTCCT
TGCTCAGCCTGCCCTTGTCGTTGGTGATGGTGATCTTGTTCTTCTGGCCAGTGGTCTTGTCCTCAGCAGAGACATTCAGGATACCGTTGGCATCAATGTC
GAAGCAGACAGTGATCTGGGGAACACCCCTGGGCGCAGGCGGGATGCCAGAGAGCTCAAACTTGCCGAGCAGGTTGTTGTCCCTGGTCCTTGTCCTCTCA
CCCTCAAACACCTGGATGAGCACACCAGGCTGGTTGTCGGAGTAGGTGGAGAAGACCTGCTCCTTCTTGGTGGGGATGGTGGTGTTCCTGGTGATGAGCA
CAGTCATGACTCCTCCAGCAGTCTCAAGACCAAGAGACAGTGGGGTGACATCCAGGAGGAGAAGGTCCTGCACCTTCTCGTTCCCCTCACCGCTGAGGAT
TGCAGCCTGGACGGCAGCACCGTAGGCAACAGCTTCATCAGGGTTGATGCTCTTGCAGAGCTCCTTCCCGTTGAAGAAGTCCTGCAGCAGCTGCTGAACT
CTGGGGATTCTGGTGGAACCACCAACAAGCACAACATCATGGATAGTGCTCTTGTCCATCTTGGCATCCCTCAGGCACTTCTCCACTGGCTCCATGCACT
TCCTGAAGAGGTCCATGTTGAGCTCCTCAAACCTGGCCCTGGTGATGGTGGAATAGAAATCAACTCCCTCGAAGAGTGAATCGATCTCAATGGTGGTTTG
GGCAGTGGAAGAAAGGGTCCTCTTCGCCCTCTCACAAGAAGTCCTGAGCCTTCTCAAAGACCTGGGGTTTCCACTGATATCCTTNTTGTGCTTCCTCTTG
AACTCTNGGACAAAGTGGTTCACCATACGGTTGTCAAAGTCCTCCCCACCAAGGTGAGTGTCACCAGCCGTGGCCTTCACCTCAAAAATACCCTCCTCAA
TGGTAAGGAGAGAGACATCAAAAGTGCCACCACCAAGGTCAAAGATAAGCACATTCTTCTCACCGACACTGGTAGCCTTCTTGTCAAGACCATAAGCAAT
TGCAGCTGCTGTTGGCTCGTTGATGATACGCATCACATTAAGACCAGCAATAACACCGGCATCCTTGGTTGCCTGCCTCTGGGAATCATTGAAGTAAGCA
GGCACGGTGACAACAGCATTCTTAATAGTTACTCCTAGGTAAGCCTCAGCGATCTCACGCATCTTGATGAGGACCATGGAAGAAATTTCTTCAGCTGAGA
ACTGCTTGTCCTCACCCTTGTACTGCACTACAATCATAGGCTTGTCTGCGGGGCCAGGAATAACCTTGTACGGCCACATCTTAATATCACTCTGGACAGG
GGCATCAGCAAACCTTCTGCCAATAAGACGCTTCGCATCGAAGACGGTGTTGATGGGGTTCATGGCGACCTGGTTCTTGGCGGCATCGCCGATGAGGCGC
TCCGAGTCGGTGAAGGCGACGTACGAGGGCGTGGTGCGGTTGCCCTGGTCGTTGGCGATGATCTCGACGCGGTCGTGCTGCCACACGCCGACGCACGAGT
AGGTGGTGCCGAGGTCGATGCCGATGGCCGGCCCCTCGCCCTTGGTCGGCGCCATGGCTCTAGCTAGATCGAGAGGAAGGAAGCTAAGCTAGCTATGGAC
TAGGGTTAGGGTTTGTCGAGCCTTTGCGCAGCTGC
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