BLASTScope Option Help
  • <Sort hits order by ...>
    Specification of the element which sorts.
      Hit number(Score) (default)
      Bit score
      Query from
      definition
      alignment length

    When "Query from" is specified and two or more HSP(The continuous homology high domain)s are in one HIT(homology was accepted arrangement of DB for BLAST) it sorts by HSP which was the highest as for the score.



  • <Number of Hits> (Integer)
    Specification of the number of the Hits to display

    You can limit the number of Hits (homology was accepted arrangement of DB for BLAST) per Hit when you checked the button labelled "Limit".
    Please specify the number in textbox of right side.



  • <Number of HSPs> (Integer)
    Specification of the number of the HSPs to display

    You can limit the number of HSP(The continuous homology high domain)s when you checked the button labelled "Limit".
    Please specify the number in textbox of right side.



  • <alignment length> (Integer)
    Restriction of alignment length

    "hit" with alignment length longer than the specified numerical value can be displayed.
    Please input "0", when you do not restrict.



  • <Range of query sequence> (Integer)
    The display domain of Query is specified.

    It can be displayed that only the arrangement of the database which has homology in a part of domain and its domain among Query (inquiry) arrangement.
    Please input nothing, in displaying the whole arrangement.



  • <image width> (Integer)

    The width of a picture can be specified. (Unit : pixel)