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BLAST with BLASTScope
BLASTScope
bl2seq with BLASTScope
BLAST with BLASTScope
Output format :
Blastscope (2.2.8)
BLAST default format (2.2.24)
Program
:
blastn (DNA query vs. DNA database)
blastx (DNA query [translated into protein] vs. Protein database)
tblastx (DNA query [translated into protein] vs. DNA database [translated into protein])
blastp (Protein query vs. Protein database)
tblastn (Protein query vs. DNA database [translated into protein])
Database :
nt (All Non-redundant GenBank+EMBL+DDBJ+PDB sequences)(DNA)
nr (All GenBank+EMBL+DDBJ+PDB sequences)(Protein)
SWISSPROT(Protein)
Bacteria(ORF)(DNA)
Bacteria(ORF)(Protein)
Please specify the sequence data required.
File Upload
:
or COPY & PASTE
:
The following options will be set up if necessary.
Options for BLAST Search
Filter
ON
OFF
Expect
Matrix
PAM30
PAM70
BLOSUM80
BLOSUM62
BLOSUM45
Query Genetic Codes
Standard (1)
Vertebrate Mitochondrial (2)
Yeast Mitochondrial (3)
Mold Mitochondrial; ... (4)
Invertebrate Mitochondrial (5)
Ciliate Nuclear; ... (6)
Echinoderm Mitochondrial (9)
Euplotid Nuclear (10)
Bacterial (11)
Alternative Yeast Nuclear (12)
Ascidian Mitochondrial (13)
Flatworm Mitochondrial (14)
Blepharisma Macronuclear (15)
Frame shift penalty
for blastx
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
25
30
50
1000
No OOF
Other options:
Options for BLASTScope
Sort Hits order by :
Hit Number
bit score
query from
definition
alignment length
Number of Hits :
All Hits
Limit :
Hits
Number of HSPs :
All HSPs
Limit :
HSPs
Limit results by alignment length :
>
Limit results by range of query sequence :
-
Image width :
shigen [at] nig.ac.jp
National Institute of Genetics (NIG)
