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Last update : Aug 2, 2017

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SHIGEN Databases

Databases constructed at the National Institute of Genetics
Category Database Information source Accessions *N/G/O Year
(built-last updated)
Cell ES Cell NBRP
5
N
public (2003-2011)
Laboratory
animals
Mouse Genetic Resources NIG
142
G
public (1995-2016)
Mouse Microsatellite NIG
9,125
O/N
public (1997-2015)
MSM / B6 gSNP NBRP
459,265
O/N
public (1997-2015)
CARD R-BASE Kumamoto University
CARD
1,724
O
public (2001-2017)
Experimental Animal JSLA / NIG
746
G
public (2001-2010)
JMSR (Japan Mouse Strain Resources) 10 organizations in Japan
10,000
N/G
public (2001-2017)
Medakafish Strains NBRP
535
N
public (2003-2016)
TILLING NBRP
5,771
N
public (2003-2016)
Hd-rR cDNA NBRP
730,259
N
public (2003-2016)
Hd-rR BAC NBRP
110,017
N
public (2003-2016)
Hd-rR Fosmid NBRP
453,784
N
public (2003-2016)
related species BAC clone NBRP
241,920
N
public (2003-2016)
Zebrafish ZEBRAFISH NBRP
1099
N
public (2004-2017)
Xenopus Strain / EST NBRP
370,069
N
public (2004-2016)
Drosophila Strains NIG
19,339
N/G
public (1996-2017)
DGRC
(Japan Drosophila Resources)
NBRP
49,105
N
public (2004-2017)
C.elegans Mutant Information NBRP
8,459
N
public (2003-2017)
Promoter / Marker NBRP
187
N
public (2004-2012)

Silkworm

Silkworm NBRP
487
N
public (2004-2017)

Chimpanzee

GAIN NBRP
1,668
N
public (2002-2017)
Ciona intestinalis CITRES (Strains) NBRP
103
N
public (2008-2017)
CITRES (Construct) NBRP
320
N
public (2009-2017)
Oxycomanthus japonicus OJRES NBRP
27
N
public (2008-2014)
Paramecium Paramecium NBRP
41
N
public (2012-2016)
Wheat KOMUGI (Strains) NBRP
19,892
N/G
public (1996-2017)
KOMUGI (EST) NBRP
1,252,563
N/G
public (1997-2012)
Catalogue of Gene
Symbols
 
3,124
N/G
public (2002-2017)
Rice Oryzabase (Strains) NBRP etc.
22,214
N/G
public (1996-2017)
Strains Kyusyu University
3,805
N/G
limited (2002-2005)
Oryzabase (Gene)  
16,400
N/G
public (1996-2017)
Barley Strains NBRP
5,256
N/G
public (1998-2016)
EST NBRP
134,928
N/G
public (2002-2016)
Chrysanthemum Chrysanthemum NBRP
317
N
public (2004-2017)
Bean LegumeBase (Lotus japonicus Strains) NBRP
8,133
N/G
public (2004-2014)
LegumeBase (Lotus japonicus Clone) NBRP
119,884
N/G
public (2004-2014)
LegumeBase (Glycine max/soja Strains) NBRP
1,300
N/G
public (2004-2016)
LegumeBase (Glycine max/soja Clone) NBRP
37,890
N/G
public (2004-2016)
Algae Genetic resources NBRP
3,821
N
public (2004-2017)

Tomato

Tomato (Strains) NBRP
2,029
N
public (2008-2016)
Tomato (Clone) NBRP
97,865
N
public (2009-2010)

Morning glory

Morning Glory NBRP
1,146
N
public (2012-2017)
E.coli Strains NBRP
34,039
N/G
public (1999-2016)
PEC (Genes) NBRP
4746
G
public (1998-2016)
PEC (Deletions) NBRP
649
G
public (2004-2016)
PEC W3110 NBRP
4438
G
public (2010-2016)
The Cloning Vector Collection NBRP

465

N
public (1995-2016)
Yeast S. cerevisiae S. pombe NBRP
1,146
N
public (2004-2016)
Microbe Pathogenic microbes NBRP
27,658
N
public (2004-2017)
B.subtilis B.subtilis NBRP
3,397
N
public (2008-2016)

Cellular slime molds

Cellular slime molds NBRP
12,590
N
public (2008-2016)
Portal site NBRP (National BioResource Project NBRP  
N
public (2002-2017)
GRC (Genetic Resource Committee)    
G
public (1999-2017)
WGR (Worldwide Genetic Resources)  
N
public (2000-2017)
JGR (Japan Genetic Resources)  
83
N
public (2004-2017)

Collaborations

1: Cooperation with other Local Organizations

1-1: Kumamoto University CARD
1-2: RIKEN BRC
1-3: Laboratory Animal Resource Bank, National Institutes of Biomedical Innovation, Health and Nutrition
1-4: RIKEN PSC
1-5: Kazusa DNA Research Institute


2: International Cooperation

2-1: Oryzabase & Gramene(Cornell) & IRRI
2-2: Participating in the International Plant Ontology Project
2-3: Wheat Gene Catalogue Project (Sydney)
2-4: NBRP Zebrafish & ZFIN
2-5: NBRP C.elegans & WormBase
2-6: NBRP Yeast & GeneDB & SGD

SHIGEN Database Visitors

last update: 2017/01

SHIGEN sub-projects

SHIGEN sub-projects JGR NBRP@SHIGEN GRC@SHIGEN WGR@SHIGEN]
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