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Last update : Jul 15, 2016

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SHIGEN Databases

Databases constructed at the National Institute of Genetics

Category Database Information source Accessions *N/G/O Year
(built-last updated)

Cell

ES Cell

NBRP

5

N
public (2003-2008)

Laboratory
animals

Mouse Genetic Resources

NIG

142

G
public (1995-2015)

Mouse Microsatellite

NIG

9,125

O/N
public (1997-2013)

MSM / B6 gSNP

NBRP

459,265

O/N
public (1997-2015)

CARD R-BASE

Kumamoto University
CARD

1,724

O
public (2001-2016)

Experimental Animal

JSLA / NIG

746

G
public (2001-2010)

JMSR (Japan Mouse Strain Resources)

10 organizations in Japan

9,334

N/G
public (2001-2016)

Medakafish

Strains

NBRP

515

N
public (2003-2015)

TILLING

NBRP

5,771

N
public (2003-2015)

Hd-rR cDNA

NBRP

730,259

N
public (2003-2015)

Hd-rR BAC

NBRP

110,017

N
public (2003-2015)

Hd-rR Fosmid

NBRP

453,784

N
public (2003-2015)

related species BAC clone

NBRP

241,920

N
public (2003-2015)

Zebrafish

ZEBRAFISH

NBRP

1099

N
public (2004-2016)

Xenopus

Strain / EST

NBRP

370,069

N
public (2004-2013)

Drosophila

Strains

NIG

17,952

N/G
public (1996-2016)

DGRC
(Japan Drosophila Resources)

NBRP

40,906

N
public (2004-2016)

C.elegans

Mutant Information

NBRP

6,988

N
public (2003-2016)

Promoter / Marker

NBRP

187

N
public (2004-2012)

Silkworm

Silkworm

NBRP

462

N
public (2004-2015)

Chimpanzee

GAIN

NBRP

1,668

N
public (2002-2016)

Ciona intestinalis

CITRES (Strains)

NBRP

100

N
public (2008-2016)

CITRES (Construct)

NBRP

222

N
public (2009-2015)

Oxycomanthus japonicus

OJRES

NBRP

27

N
public (2008-2013)

Paramecium

Paramecium

NBRP

32

N
public (2012-2014)

Wheat

KOMUGI (Strains)

NBRP

19,827

N/G
public (1996-2015)

KOMUGI (EST)

NBRP

1,252,563

N/G
public (1997-2012)

Catalogue of Gene
Symbols

 

3,029

N/G
public (2002-2014)

Rice

Oryzabase (Strains)

NBRP etc.

21,632

N/G
public (1996-2015)

Strains

Kyusyu University

3,805

N/G

limited (2002-2005)

Oryzabase (Gene)

 

15,849

N/G
public (1996-2016)

Barley

Strains

NBRP

5,256

N/G
public (1998-2013)

EST

NBRP

134,928

N/G
public (2002-2009)

Chrysanthemum

Chrysanthemum

NBRP

317

N
public (2004-2015)

Bean

LegumeBase (Lotus japonicus Strains)

NBRP

8,133

N/G
public (2004-2016)

LegumeBase (Lotus japonicus Clone)

NBRP

119,884

N/G
public (2004-2014)

LegumeBase (Glycine max/soja Strains)

NBRP

1,300

N/G
public (2004-2014)

LegumeBase (Glycine max/soja Clone)

NBRP

37,890

N/G
public (2004-2014)

Algae

Genetic resources

NBRP

3,702

N
public (2004-2016)

Tomato

Tomato (Strains)

NBRP

2,029

N
public (2008-2015)

Tomato (Clone)

NBRP

97,865

N
public (2009)

Morning glory

Morning Glory

NBRP

1,146

N
public (2012)

E.coli

Strains

NBRP

33,7422

N/G
public (1999-2015)

PEC (Genes)

NBRP

4744

G
public (1998-2015)

PEC (Deletions)

NBRP

649

G
public (2004-2014)

PEC W3110

NBRP

G
public (2010-2014)

The Cloning Vector Collection

NBRP

545

N
public (1995-2008)

Yeast

S. cerevisiae S. pombe

NBRP

105,871

N
public (2004-2016)

Microbe

Pathogenic microbes

NBRP

27,295

N
public (2004-2016)

B.subtilis

B.subtilis

NBRP

3,106

N
public (2008-2014)

Cellular slime molds

Cellular slime molds

NBRP

12,344

N
public (2008-2016)

Portal site

NBRP (National BioResource Project

NBRP

 

N
public (2002-2016)

GRC (Genetic Resource Committee)

 

 

G
public (1999-2015)

WGR (Worldwide Genetic Resources)

 

N
public (2000-2016)

JGR (Japan Genetic Resources)

 

83

N
public (2004-2011)

Collaborations

1: Cooperation with other Local Organizations

1-1: Kumamoto University CARD
1-2: RIKEN BRC
1-3: Laboratory Animal Resource Bank, National Institutes of Biomedical Innovation, Health and Nutrition
1-4: RIKEN PSC
1-5: Kazusa DNA Research Institute


2: International Cooperation

2-1: Oryzabase & Gramene(Cornell) & IRRI
2-2: Participating in the International Plant Ontology Project
2-3: Wheat Gene Catalogue Project (Sydney)
2-4: NBRP Zebrafish & ZFIN
2-5: NBRP C.elegans & WormBase
2-6: NBRP Yeast & GeneDB & SGD

SHIGEN Database Visitors

last update: 2016/04

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