cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK065656     Link to RAP-DB ( IRGSP 1.0 / Build5 )
RAP ID Os01g0742500 ( IRGSP 1.0 / Build5 )
RAP - Chromosome No. 1
RAP - Location, Length 32,739,307 -  32,743,635  ( - );   4,329(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 32,739,307 -  32,740,103 ( - );   797 (bp)
Exon 2 Location 32,740,196 -  32,740,277 ( - );   82 (bp)
Exon 3 Location 32,740,491 -  32,740,621 ( - );   131 (bp)
Exon 4 Location 32,740,695 -  32,740,793 ( - );   99 (bp)
Exon 5 Location 32,740,934 -  32,741,089 ( - );   156 (bp)
Exon 6 Location 32,741,300 -  32,741,374 ( - );   75 (bp)
Exon 7 Location 32,741,977 -  32,742,159 ( - );   183 (bp)
Exon 8 Location 32,742,256 -  32,742,406 ( - );   151 (bp)
Exon 9 Location 32,743,155 -  32,743,635 ( - );   481 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
Tigr ID cDNA
Accession No
RiceXPro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
UniProt
Accession No
UniProt Entry
Name
Os01g0742500 Os01t0742500-01 201031 J013039E17 978 LOC_Os01g53930.1 AK065656 20537 AP008207.2 255672756 BAF06128.1 113533745 NC_008394.4 297598437 NM_001050749.1 115439868 NP_001044214.1 115439869 Q8LQ68 HXK6_ORYSJ
Os01g0742500 Os01t0742500-01 201031 J013039E17 978 LOC_Os01g53930.2 AK065656 20537 AP008207.2 255672756 BAF06128.1 113533745 NC_008394.4 297598437 NM_001050749.1 115439868 NP_001044214.1 115439869 Q8LQ68 HXK6_ORYSJ


Chromosome: 1 ,  position: 32,739,307 - 32,743,635 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 agaggagaga gactgaggga gggaggcagg aggaaggagg aggaggagga cgctgcagtg 
000061 gtgggtggcg tagctcccga tccgggaagc cgacccggtc tgggggattt gctcctggcg 
000121 cgcgctcgat cgagagggag gccagggttg ggttgggggg agcgtgaaga agcgcgcgcg 
000181 cggctatggg gaaggggacg gtagtgggga cggcggtggt ggtgtgcgct gcagcggccg 
000241 cggcggttgg ggtggcggtg gtggtgtcgc ggaggaggag gagcaagcgg gaggcggagg 
000301 aggagcggcg gaggagggcc gccgctgtga tcgaggaggt ggagcagagg ttctcgacgc 
000361 ccacggcgct gctgcgcggc atcgcggacg ccatggtgga ggagatggag cgcggcctcc 
000421 gcgccgaccc tcacgccccg ctcaagatgc tcatcagcta cgtcgacaac ctccccaccg 
000481 ggtaggcctc cctccgctcc gcttgtgcga tttttatgat ttctggggtg tacgtgacac 
000541 gagaaagctt gggaatagtt gttactgtgt tcgcgagggg tgtttctctt cgggggcgaa 
000601 tcggttggaa atccctagcg gcttagcgct tgcttaggtt cggatttggc ataaatgtgg 
000661 cattgatctt cggttgttga gatggaggtg cgacatattg atatcaagag cactgtgcct 
000721 tgacacggcc ttttagctct tttcttattg atcacggaag aatgatgaga cctattcgtt 
000781 tcctatggaa ttttgatcta ctgagtggag gtttctcacg gtggtagcag aaagtggcca 
000841 ccaggataga cttgacataa tttttttttc gcagtgaaga ctccagacag aattataaaa 
000901 tgaacaatta ggttccggtc acttttgaca actatatata tctgtgtgtc cattttgtaa 
000961 tttgtgcctt catgctgggc ttacgatcag tcgatcacag aacaatcgtt cttttttttg 
001021 taccatgtga attttgtagg aaatgtcatg aaaggtttat gaataagttt agagaaagaa 
001081 atggtcaagg actcgaggct taaaagtttc agtgagtttg acagtttatt atatgtatcc 
001141 ataggcgtat ggaaaatgaa aaatgttgag cctatcactt catgaaatct tcttttatgc 
001201 ttcctctgat ttgcatgcca cttgtgcagg gatgagcacg gactgttcta tgctctcgat 
001261 cttgggggca ccaatttccg tgttatacgt gttcagcttg gaggaaggga aaagcgtgtt 
001321 gttagtcaac agtacgaaga ggttgccatt ccacctcacc tgatggttgg gacttctatg 
001381 gtcagtggct tattcctttc aactgttatg tttcaattct cctgtgtttg cacaatttct 
001441 ttcatggtta ctcaaatttc agaaatatga gtacaggaac tgtttgactt cattgcggct 
001501 gagttggaaa gttttgtcaa gaccgaggga gaggatttcc acttgccaga gggcaggcag 
001561 agagagttag gcttcacctt ttctttccca gtgcaccaaa catcaatatc atcaggcact 
001621 cttattaagt ggacaaaggg attttccatc aatggcacgg taaaattcga atggccttag 
001681 tataaatttc atggctaaat gatctaggaa ttatttatta ccttgacgat cagtcttgat 
001741 tagaaaccac gttgtgtcag caaacgaatt ctcactagct gtgtcacttt tgacttttgg 
001801 gttccctgca ttgaccaagt gaccagccgt tgcccttcat tttcctttca gaatatttgg 
001861 actgatgttt ggttatccat aaattaacat gtttggtaaa gttattctta gatgtgatat 
001921 aaacgggaca tggtggcata tgtccccatt tatccaattc acaagtatct tataattgct 
001981 tctaaatcct gcggcgattg tgaatgcaga tgttacaatt agagctgtgt ttgctataca 
002041 acacttgtaa ccataaaaaa atgtatttgc ttatcctgca cttcttaaat ttgaacctcc 
002101 aagaatgaag cactctagtc atatttctgt ttcctacttt taatgtggca atttctagcc 
002161 tctcaagaca aatgtggcat caacactgca atatcttttt taattttata atgttatgcc 
002221 cataattttg atgtatagac taatgatttc tgtgaactca ggtgggggaa gatgttgtgg 
002281 ctgaattgag cagggctatg gaaaggcaag ggcttgatat gaaagttaca gctcttgtaa 
002341 gtaaattctt ggttcatgac tctgttaaaa ttatttatca tctgaaactt tcccatgcct 
002401 gctactgcta tatgctgatg ggtaaataca ttggcattcc tatgaaaatg ctgactttgg 
002461 agtttttcaa tgttctatga gtttggatgt ttactagtat atcaccagac tgtgtcatgt 
002521 aaattgacaa ctaatatttt gcccaggtta atgacactgt aggcacattg gctggcggaa 
002581 gatatgttga taatgacgtt gctgctgctg taatattagg cactggcaca aacgcagcct 
002641 acgtggagca tgcaaatgca attccaaaat ggactggatt actacctaga tcaggaaata 
002701 tggttagtga ctgatttcgt tatacttgta gcattaaatg tctttgaacc ttgtataaat 
002761 gtatgtatcc acttcaactt ctgcactgga tgattgtcac atcaattaat attataacat 
002821 ttggatcttt ggtatgatga aggtgattaa catggaatgg ggaaacttca agtcagaaag 
002881 gcttcctcgt tcagattacg ataatgcctt ggactttgaa agtttaaacc caggcgagca 
002941 ggtattgttt attttatctt tttattttcc aactatatgt gggcatgaaa gaatttcggt 
003001 cttcttttcc tcagatatat gaaaagatga tttccggcat gtatcttgga gagattgtgc 
003061 gcagaatctt gcttaagctt gctcatgatg cttccttgtt tggagatgtt gttccaacaa 
003121 agctggagca gcgctttata ctgaggtgca cttctatgtc ccctatgttg atcatctaag 
003181 tatctagctt ttcatatatg cagcacagaa ctatcaaaat aagataaaat ttcaacatag 
003241 actgtatggt gtgcattatg cgttccttga tcatggtagc acagaactat caaaataaga 
003301 taaattcatg taactatgta gaaaatttct taacggaact ccaattgtgg tattgcagga 
003361 cgccggacat gtcagcgatg catcatgata cctcacatga tctgaaacac ctgggagcta 
003421 agctgaagga tatcctgggg gtatgataat acatatcttg aaaataggat actatcaaat 
003481 ctaattttca agaaccattg attacttacg atatgcctga acttatgttt aggtcgctga 
003541 tacttccctg gaagcacgat acatcaccct tcatgtctgc gacctcgttg cagagagagg 
003601 tgcacgctta gctgctgctg gtatatatgg cattctaaag aagctgggca gggacagagt 
003661 gccaagtgac ggtagtcaaa agcagaggac tgtcattgct ctggatggtg gtctctatga 
003721 gcattacaag aagttcagaa cctgcctaga agcaacgctt gcagacctgc ttggagagga 
003781 ggctgcctca tcagttgttg tcaagttggc aaacgatggc tctggcatcg gagctgcact 
003841 tcttgcagca tctcactccc agtatgctag cgtcgagtag taacaggagc tcatgggact 
003901 gagctcccag tgtagcttgt tttcctccca ttttccccgt ttctttccaa tgggagttcg 
003961 tttccctcct gcgattcgca tctccttttg ctattctgca gtcacataaa cgagtgcctg 
004021 tgcagcggga tgtagctagt atggcgccaa agagtttgca gttatcacat gaacaagcat 
004081 ttgcaactgc agggaagtga aaacgggggc ttgaatgatg ccgttctttt cctgcaaatt 
004141 attttccccc tttccctgta agtttgtatt gtgatgcgat gtcgcaaacc aatcacagcg 
004201 gtttcgcgtg tagccttttg tcattcagat ttcagaataa agagggggac ataatttcac 
004261 ttttcgtatg tcagtttgaa ctatgtatgt actcttacac actggtatca aagctcaaat 
004321 gatctgatc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AV942069 bah39e16 583
more... (Total Hit Count: 5 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ671797 whkv7d23 761
more... (Total Hit Count: 43 )
/rice/oryzabase