cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK065370     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os01g0813400 ( IRGSP 1.0 )
RAP - Chromosome No. 1
RAP - Location, Length 36,310,023 -  36,313,214  ( + ) ;   3,192(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 36,310,023 -  36,310,225 ( + ) ;   203 (bp)
Exon 2 Location 36,310,713 -  36,310,869 ( + ) ;   157 (bp)
Exon 3 Location 36,311,423 -  36,311,493 ( + ) ;   71 (bp)
Exon 4 Location 36,311,669 -  36,311,788 ( + ) ;   120 (bp)
Exon 5 Location 36,312,131 -  36,312,249 ( + ) ;   119 (bp)
Exon 6 Location 36,312,667 -  36,312,748 ( + ) ;   82 (bp)
Exon 7 Location 36,312,960 -  36,313,214 ( + ) ;   255 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os01g0813400 Os01t0813400-01 200728 J013022G24 687 LOC_Os01g59790.1 AK065370 23053 AP008207.2 255672756 BAF06513.1 113534130 NC_008394.4 297598437 NM_001051134.1 115440638 NP_001044599.1 115440639 Q06396 ARF1_ORYSJ
Os01g0813400 Os01t0813400-01 200728 J013022G24 687 LOC_Os01g59790.2 AK065370 23053 AP008207.2 255672756 BAF06513.1 113534130 NC_008394.4 297598437 NM_001051134.1 115440638 NP_001044599.1 115440639 Q06396 ARF1_ORYSJ
Os01g0813400 Os01t0813400-01 200728 J013022G24 687 LOC_Os01g59790.3 AK065370 23053 AP008207.2 255672756 BAF06513.1 113534130 NC_008394.4 297598437 NM_001051134.1 115440638 NP_001044599.1 115440639 Q06396 ARF1_ORYSJ


Chromosome: 1 ,  position: 36,310,023 - 36,313,214 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gcaccgcacc gcacccgcaa gcgcaagccc agccgcctcg tcgtgttcgc gttcgtcgcg 
000061 cggctccgac ctccaaagcc gccgctaccc ttcccgtctt cgtcgtcgcc gcgcacgcag 
000121 atcgcgaacc agcccgcgcg ccgcgcagca gcgccgcgga gaggaaagga gagctccgcc 
000181 gcgcaccccc cgccaccatc ttggtgagtt gcccgcgcgc tctgctcgat ccctctcgtc 
000241 ggagctcgcg gatctgcccg ctccggtgga tttctgttgc gctctctttt ttttttttct 
000301 aaatgaaaat tccgtgcgag tctgtggtcg attccgtgga gagatgagtc gttttcgttg 
000361 ctgattcggt gatggaggca tgccgcgtag tctccacgct actattggcg gggggaatct 
000421 gttcgagcct tttcgctttc tgcttcgggt gttggcgaat ctgattcgat tccgcggctt 
000481 tgcgccccgt cgtttcatgg atcgaacagc acgctatggg gatgtgggtg tttagatctc 
000541 ccggatctcg taccttgggc tcatcaattt ccgcttagtt ctgtgtgctg tcaagtgagc 
000601 atgggcgcgt ggggatcggc gcgaagtctg cggtgatctg tgttgctagc tgagacttac 
000661 ctgtgctgct gaatttttgt tttggagcag tagggagaga tggggctcac gttcacgaag 
000721 ctgttcagcc gcctcttcgc gaagaaagag atgaggattc tcatggtcgg gctcgatgca 
000781 gccggtaaga ccaccatcct ctacaagctc aagcttggcg agatcgtcac gaccatcccc 
000841 accatcggta agcactctgt tcatgtcctt gttcttctta atgagctgtc ttagctgtag 
000901 gaaggtacta tgctgcacgt ttatgtacag gaacgaactt ttaattacat ggagtgatgg 
000961 agtgagcact agttctgttt gtagaaacaa acttgaattt aaactctaca tggagtgagc 
001021 actagttctg ttatgtagaa acaaacttga atttaaactc tagtaaggag gaatagttag 
001081 cacgagcttg ttcgtattat aatcacatag caaactttga tgttaaggta ttggatatca 
001141 ctttggctac aaataaattt actacttgaa actttggtta gaactaagcc aagcatatgc 
001201 tactacactt ctgtagctct taatggaaac atctgtaatt ctctatactt gtgattattc 
001261 ttaatgatac atatgtatgc atctgttcat atggactcct tttattgggt cattatgata 
001321 atgtatttgt atttttgcca tgtggcttca ttgcattata gttttaataa atgaaactac 
001381 cttattctgg aaattttcag gatttaatgt tgaaaccgtg gaatacaaga acatcagctt 
001441 cactgtttgg gatgtcggtg gccaggacaa ggtaatagag tcagcttata gttagaaatc 
001501 ataactacca tttgttggct gttcctagcc cttggggtaa accggaattg aacttctttt 
001561 atgcattgat gttgtcgtgc taagctgcta atgctgtcat gaactttccc aacttaattc 
001621 ttttattgat ctataaatca aaacagatca ggcccctgtg gaggcactat ttccagaaca 
001681 cacagggact catctttgtt gtggacagca atgataggga gcgtgttgtt gaggccagag 
001741 acgagcttca caggatgctg aacgaggtaa tgatttttgt tgtagacttg tagatatttg 
001801 gttgttccat agtgttccca gtctgcatat attgaatcta tttacgaagc gcttattcga 
001861 cattattgca gctacaaaat tggaaaaaag taagttgctt gtttggttca caaaaatctt 
001921 aggattttcc atgaccttgt atgaaaatgc taagatagta gttgaaatgc tatgaatcag 
001981 tagtcatttt tgttcaacct atttgtctgt tgatttattt aaaacttact gttagaaata 
002041 ccagttccct aaattatcat aaaccaatta attccatgtt aataatgaga gacccttctg 
002101 tgtcgcagga tgagctgcgt gatgctgtgc tgcttgtatt tgcaaacaaa caagatcttc 
002161 ctaatgccat gaatgcagct gaaatcactg acaagcttgg tttgcattcc ctgcgccaga 
002221 ggcactggta aggaactcca tatgaacaat tcaaaagtta tttaccttct aattgcttgg 
002281 tcagagttat gcagctctgc tattctgcaa attatcaggg tttacatatt ggacatgctg 
002341 aaaacaacac aactagatct gtttgcaaga gtatagtgca ttttttaatg ggttaattgg 
002401 atccatgcca ttacaacttc ttcgattttg aaaaacacca ttactattcg tctatttgga 
002461 gacatgtatg tgacacactc tagatgtttt tgatggttta tttagtcttg tggttggggt 
002521 tgaatgttac aaatgctatt tgcatctgca ttatggttta cacatctatt gtgacactgg 
002581 ttaccttttg aaatttatga aatatgcatc atgtcattaa aatatttgtt tcctggtgtc 
002641 gcaggtacat tcagagcact tgtgctacat ctggtgaagg gttgtatgag ggtcttgact 
002701 ggctttccaa caacattgcc agcaaggtat gttggcctat tctaatgtct tagtctctgc 
002761 ttttgttgaa ggcctattct ggcctgaact ttggcgttta acttagggat agaagaaagc 
002821 tgaaccatgt tactcgagca ctgcctttat atacctcaat aaaatcgctc cgagtacttg 
002881 gccttaaacc ttaagcatct gcagctgatg acatgcattt tcattatttt tgtgcaggct 
002941 tgagcgtttt ggcagctgga tatctgaaca attcactagt gccggtttac atattatata 
003001 acatatacac cctaccacac atagtgtggg tgcctgtgaa ggaaaaaact cctttgtgga 
003061 ggctagtacc agattgttcc ttttcgtggg cactataagt gcttatattt tgtttggttt 
003121 tacaacattt actgtgctgt ccatatgtac ccgtttgttc tgagatggtc tagtaaattg 
003181 atatgctttg tc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BJ552243 rbah50m17 757
more... (Total Hit Count: 156 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ904977 whthkles36d24 723
more... (Total Hit Count: 1655 )
/rice/oryzabase