cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK061842     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os03g0402800 ( IRGSP 1.0 )
RAP - Chromosome No. 3
RAP - Location, Length 17,039,698 -  17,042,006  ( - );   2,309(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 17,039,698 -  17,040,176 ( - );   479 (bp)
Exon 2 Location 17,040,277 -  17,040,334 ( - );   58 (bp)
Exon 3 Location 17,040,439 -  17,040,698 ( - );   260 (bp)
Exon 4 Location 17,041,348 -  17,041,450 ( - );   103 (bp)
Exon 5 Location 17,041,733 -  17,042,006 ( - );   274 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os03g0402800 Os03t0402800-01 104652 001040E06 9438 LOC_Os03g28940.1 AK061842 42541 AP008209.2 255674134 BAF12236.1 113548793 NC_008396.2 297602023 NM_001056857.1 115453442 NP_001050322.1 115453443
Os03g0402800 Os03t0402800-01 104652 001040E06 9438 LOC_Os03g28940.2 AK061842 42541 AP008209.2 255674134 BAF12236.1 113548793 NC_008396.2 297602023 NM_001056857.1 115453442 NP_001050322.1 115453443


Chromosome: 3 ,  position: 17,039,698 - 17,042,006 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 aagacaactc agagacagac aaggacgagc aacccgcaac cgcgaccaga ggagaagact 
000061 cgatcgaatc gaatcgaagc gggaggattt cgggggtccg tgactccgtt cggagaaaag 
000121 gattcagctt gtgggcagaa gaagaagaag aagatggctt ccgcgaaatc cggggagagg 
000181 gggagcagca gcttcgccat ggcctgcagc ctgctcagcc gctacgtcag gcagaacggc 
000241 gcagccgccg gcgagctcgg cctcggcatc agaggtcacc tccctttctt tttctttttt 
000301 tccttctgca aagtctggat ctttatcttt acgggttttg ggtgaaaaaa acctccccta 
000361 ggaaggtttc cgtgagatct ggtctagttc ttcgagcttt ggaagcgaga attcccccat 
000421 gtagaatttt attcggctta aaccagtctc aaccattcca attctgcgca tctagctagc 
000481 tgtaaaattc gcaacatttt ttttaaatct gatgttgtga atctgggctg aaaaactatg 
000541 tcatatcatt tttcaggtga agccgatgcg aacaagggga aggagaccat ggagctgttc 
000601 ccccagaatt ccgggttcgg ctctgaagct gctgccgtga aggagacccc ggatgcgagg 
000661 tactcaacac aatctttgtt cgaattgctt cagctatcag ttcatacggt tcctttagct 
000721 gtagtcacat gataggagaa accaatagca acaatccaac caaacaaagt agtggttggt 
000781 aggtagtgtg gaggaggagg agaacatctt gccttgtcct gaccagatct tagtgctgcc 
000841 aggagctgag ctggtcagct ctcgggtcat ggtctgaaat ctaattcgtg tgtaaaatgg 
000901 atataattta gtttagagtt ctagggatgg atttcggtgt gatggaaagg ttcgatattt 
000961 aatccaatat agaactggtg ctatgcaagt ctgcagttcc ttcttctgtt ttttgtgcga 
001021 gtcgtttttt gtgcgagtca acgatgtatg tctcgcaact aataaccacg ggtttcagac 
001081 ttagtgggct cgcacgatcc gaaagtgaaa atgttctgac tcgagtgatt catgaacaaa 
001141 aaacccaaat attagttggt acttactaca agttattctt ctgaacatat gcgtagatgg 
001201 cgggtgcttg ctgaccgata tcagttagta aatagtttct gttgtgtaag ctttaaaatt 
001261 ggttaaatgg ttgtgtttgt ctaagctttc ttgtatttcc gttgtcaggg agcaagagaa 
001321 gcgccaatta accatcttct acggtgggaa ggtcctggtg tttgatgact tcccagctga 
001381 gaaggccaag gacctgatgc agatggccag caagagttcc tccacagcgc agaactgtgt 
001441 ccttcttcca tcttccgcta ctgcaaccgt tgccgacaac actaaggtgt ctgctgtacc 
001501 agccccagca agtgcacttc ctgttgctca ggccaatgcc ccgaaacctg ttcgtccaaa 
001561 tgctgctggt aactactcta acctcggctg ttattgcttg ctctgaatga tggaatatac 
001621 ttgtagcatg tgaatccatt ttattgtact aactgttctt caaatcctgc agatctgcct 
001681 caggctagga aggcgtcgct tcaccggttc ctcgagaaaa gaaaggatcg gtaggttatg 
001741 cttgctatca tggcagcaca aagtatagtc aaattctaca attcacaatt ctagattttg 
001801 gatctaactt ttgctgctcc tttatttcag ccttcaggct aaagcaccct accagggttc 
001861 cccttcagat gcttctccgg tcaagaagga gctgcaggag agtcagccat ggcttgggtt 
001921 aggacctcag gttgccgctc ccgacctgag cttgcggcag gaatcgagcc aatgaatcaa 
001981 tgctcaattc tgagatgccc ctctcatcag atgattcagt catagaggtt atcacaactc 
002041 ttgaattggg tgttttgtgt taggagatga tccgatgaca aggcgatgtt cttctgatat 
002101 atatactagg attgaatgta aagaaagtag ctgatgatta tgaccagtaa tctgaatcaa 
002161 attgctatga tagaaagcag aagattctgt aatcagtaca acccaagaaa cctcatttgt 
002221 accaattcaa tatcgttttg ctttggcatt gccatgtaga agcaaagcaa atgtactgct 
002281 aatatataca catcacaaga ttgattgtt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AV939098 bah20m21 599
more... (Total Hit Count: 2 )
Hit Wheat ESTs
Acc. No. Clone Name Length
BJ213888 wh24l18 573
more... (Total Hit Count: 53 )
/rice/oryzabase