cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK061662     Link to RAP-DB ( IRGSP 1.0 / Build5 )
RAP ID Os03g0351500 ( IRGSP 1.0 / Build5 )
RAP - Chromosome No. 3
RAP - Location, Length 13,229,394 -  13,232,451  ( + ) ;   3,058(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 13,229,394 -  13,229,483 ( + ) ;   90 (bp)
Exon 2 Location 13,230,565 -  13,230,652 ( + ) ;   88 (bp)
Exon 3 Location 13,230,745 -  13,230,846 ( + ) ;   102 (bp)
Exon 4 Location 13,230,971 -  13,231,066 ( + ) ;   96 (bp)
Exon 5 Location 13,231,321 -  13,231,352 ( + ) ;   32 (bp)
Exon 6 Location 13,231,501 -  13,231,576 ( + ) ;   76 (bp)
Exon 7 Location 13,232,038 -  13,232,091 ( + ) ;   54 (bp)
Exon 8 Location 13,232,205 -  13,232,451 ( + ) ;   247 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
Tigr ID cDNA
Accession No
RiceXPro
FeatureNum
UniProt
Accession No
UniProt Entry
Name
Os03g0351500 Os03t0351500-01 104343 001036E04 9376 LOC_Os03g22810.1 AK061662 32987 Q0DRV6 SODC1_ORYSJ


Chromosome: 3 ,  position: 13,229,394 - 13,232,451 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 aaccttccag aagctccaga ttccaaacca gcaggagtcg cctcgcctcc tccttcatcc 
000061 tcctcgtcgt cgccgcgggg gtcgcctgag gtaggaatcc caacaacccc cccccccccc 
000121 ccccacccaa gcaagcttct agggttttcg accgcgcctc gcttcctccg gtttcgtggg 
000181 aggcggtggg tctccctccc tccctgcgtg tggatctcag atgggatcgg tgtttccttg 
000241 ttggtcttgc tgcttcgcgg ggatttgggg cttcgggcgg gctgggggtg ggggggggga 
000301 ttgttgtgga tgttgattga tcgatcggtg ttgttggttc ggggcgattg gttggttggt 
000361 ggggaggaac ggctcgtctc gtgtgtttga atccatatgc aagttcaagt gatgcgagag 
000421 tgttttgatg cgtggacctg ctgcttcctt tttttttttt ccttttgagc gatgattcgt 
000481 gctgctgcgg agggatacgg atttgttagt tgccgattac tagtaataat cattggaatt 
000541 gtgtactggg ctctggctgc tcatgatgcg atgggctttg tgatatgttc atgattagat 
000601 ttagacatgt tttttctgca agtgtggagt tgattgcaga gtgtccttcc ctgatatgtc 
000661 gggggattgg gtggatgtag agaattgtag atttgggagt tattggacta gccaacagac 
000721 agtttcctcg tgaattcgat cccttcatgc agaaatgaat ggagggatag gatgaaatgg 
000781 ggtgagaaga atggatagct aagattgaaa cttacccttt agatgggtgg gaaatcatat 
000841 cccaaaccga ttttctaggg ataattcctc tatactagac gtgtgttttg tttgtatcta 
000901 gtatgtttgc agtgggcagt ggcatttgtt ctatgatgcc tttggtttac atgctttgga 
000961 aaaaacaata gatcattggg ccatattgtt atctttttct gactagtagt aaatgatgcg 
001021 tctgtgttgc ttctgcttta acatcttttc aatcttcact aggataattt catagttcaa 
001081 tatgttcttt gggaacttgg ttgggtttta ggacctctag aggctacttc tgccacttgc 
001141 taagtaactg ttttgtggaa tttgtttaca gatcacatta acaatggtga aggctgttgt 
001201 tgtgcttggt agcagtgaga ttgttaaggg cactatccac tttgtccaag agggagatgg 
001261 tatgccatca gtcatcacca ttttcatgat tgtcttgaat tgaattttag tccttgaatc 
001321 gttgagattt actggcatgt ttgattctta ggtcccacca ctgtgactgg aagtgtctct 
001381 ggcctcaagc ctggtctcca tgggttccat attcatgcac ttggtgacac caccaatggt 
001441 tgcatgtcaa ctggtaatta ttattgttat tacatatata ttggcttctc gcctgcctag 
001501 atgtaccatc aggattgata caggctatca tcatctgttg aattgattac ttatgatgca 
001561 cttgtttcat aatgtagggc cacactacaa tcctgccgga aaggagcatg gagcaccaga 
001621 agatgagacc cgccatgctg gtgatcttgg aaatgtcacc gctggagaag atggtttgtt 
001681 ctttttccct ttattccgaa tttttatttg ttccatacct gttaatgatt taacataacc 
001741 atattagttg tggtcttgta gtccttaact cattgtcaat ttgtagtaat actttattcc 
001801 gaatttttat ttgttccata cctgttaatg atttaacata accatattag ttgtggtctt 
001861 gtagtcctta actcattgtc aatttgtagt aataattgtt gctgagagtt tatttctctg 
001921 ctgtcaggtg ttgctaatat ccatgttgtt gacagtcagg taagtaaaca ttcagaaaaa 
001981 gaacattctc cgtcatttga tttatggaac caataccaca catcccctta ttattctgct 
002041 gttaccttgt cttttccttc tttctttttc ctgtgtgtta acatggataa ccatttatct 
002101 gtgtcagatt ccacttactg gaccaaattc aatcattggc agagccgtcg ttgtgcatgc 
002161 cgatcctgat gatcttggaa agggtaatat tacagacaac tgtttgtgct catttatttt 
002221 gtctgtgtgc ttgtgtgctc cttttcttct cttttgctaa ggaagatctc actactgttg 
002281 ggtctatgat gacaacaatc actttctatt gaatggattg cataaacatg ctgagttagt 
002341 agtcagaaat gtgtagggtc cttttgtttt atcataccaa gttgcacacg actgtgttgt 
002401 aggcattttt acctttgggg gtaaaggata tctgaacttt acatggaaaa tttgaataag 
002461 ttgttctgct atgccaggca ctatttgact tgaatctcct atctgtgcac ttcaccataa 
002521 actatttgac ttgaatctcc tatctgtgca cttcaccata aacctatctg tgccaattct 
002581 cattgcagtg agccagttat cagtgcagct taaataacat tcattggttt tggtgctctt 
002641 ttaggtgggc acgagctgag caagaccacc ggaaacgctg gtggccgtgt tgcttgcggt 
002701 aagttcagag gccgtacaat ccagcccacc tgaaaatcag cttcgtgtca catattgatc 
002761 gactcaccac ttcatctcct tttctctaat tctttcccaa ttttacttca gggatcatcg 
002821 gacttcaagg ctgaaacctg gaggtgtgaa ctcaccttcc atctcccagc accagaagcc 
002881 tgaaactcta cgagctctta gccgtttcgt ctttacctga gtggctactc tagattctac 
002941 aataagcacc tgatctctgc gcatggtttt tggtgtacca ttctgtcgcc cgcatcgttg 
003001 gcgcccaatg aactatgtgt tttgtgttaa accttaagct gaagggtacc atttgtag

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BY840689 baet48a03 424
more... (Total Hit Count: 52 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ848369 whatlal9d04 684
more... (Total Hit Count: 749 )
/rice/oryzabase