Update info.cDNA ( Data source : RAP-DB )
cDNA Detail
jump to Other species ESTs data to homologous Rice cDNA
| General information | |
|---|---|
| RAP - Accession No. | AK061662 Link to RAP-DB ( IRGSP 1.0 ) |
| RAP ID | Os03g0351500 ( IRGSP 1.0 ) |
| RAP - Chromosome No. | 3 |
| RAP - Location, Length | 13,229,394 - 13,232,451 ( + ) ; 3,058(bp) |
| Exon (Data source : RAP-DB) | ||
|---|---|---|
| Exon 1 | Location | 13,229,394 - 13,229,483 ( + ) ; 90 (bp) |
| Exon 2 | Location | 13,230,565 - 13,230,652 ( + ) ; 88 (bp) |
| Exon 3 | Location | 13,230,745 - 13,230,846 ( + ) ; 102 (bp) |
| Exon 4 | Location | 13,230,971 - 13,231,066 ( + ) ; 96 (bp) |
| Exon 5 | Location | 13,231,321 - 13,231,352 ( + ) ; 32 (bp) |
| Exon 6 | Location | 13,231,501 - 13,231,576 ( + ) ; 76 (bp) |
| Exon 7 | Location | 13,232,038 - 13,232,091 ( + ) ; 54 (bp) |
| Exon 8 | Location | 13,232,205 - 13,232,451 ( + ) ; 247 (bp) |
| Related Rice IDs | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| RAP Locus | RAP ID | KOME Clone ID |
KOME Clone Name |
KOME Cluster ID |
MSU ID | cDNA Accession No |
RiceXPro FeatureNum |
UniProt Accession No |
UniProt Entry Name |
| Os03g0351500 | Os03t0351500-01 | 104343 | 001036E04 | 9376 | LOC_Os03g22810.1 | AK061662 | 32987 | Q0DRV6 | SODC1_ORYSJ |
Chromosome: 3 , position: 13,229,394 - 13,232,451 bp |
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| Sequence (Data source : RAP-DB) | |
|---|---|
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Nucleotide
Fasta Format |
000001 aaccttccag aagctccaga ttccaaacca gcaggagtcg cctcgcctcc tccttcatcc 000061 tcctcgtcgt cgccgcgggg gtcgcctgag gtaggaatcc caacaacccc cccccccccc 000121 ccccacccaa gcaagcttct agggttttcg accgcgcctc gcttcctccg gtttcgtggg 000181 aggcggtggg tctccctccc tccctgcgtg tggatctcag atgggatcgg tgtttccttg 000241 ttggtcttgc tgcttcgcgg ggatttgggg cttcgggcgg gctgggggtg ggggggggga 000301 ttgttgtgga tgttgattga tcgatcggtg ttgttggttc ggggcgattg gttggttggt 000361 ggggaggaac ggctcgtctc gtgtgtttga atccatatgc aagttcaagt gatgcgagag 000421 tgttttgatg cgtggacctg ctgcttcctt tttttttttt ccttttgagc gatgattcgt 000481 gctgctgcgg agggatacgg atttgttagt tgccgattac tagtaataat cattggaatt 000541 gtgtactggg ctctggctgc tcatgatgcg atgggctttg tgatatgttc atgattagat 000601 ttagacatgt tttttctgca agtgtggagt tgattgcaga gtgtccttcc ctgatatgtc 000661 gggggattgg gtggatgtag agaattgtag atttgggagt tattggacta gccaacagac 000721 agtttcctcg tgaattcgat cccttcatgc agaaatgaat ggagggatag gatgaaatgg 000781 ggtgagaaga atggatagct aagattgaaa cttacccttt agatgggtgg gaaatcatat 000841 cccaaaccga ttttctaggg ataattcctc tatactagac gtgtgttttg tttgtatcta 000901 gtatgtttgc agtgggcagt ggcatttgtt ctatgatgcc tttggtttac atgctttgga 000961 aaaaacaata gatcattggg ccatattgtt atctttttct gactagtagt aaatgatgcg 001021 tctgtgttgc ttctgcttta acatcttttc aatcttcact aggataattt catagttcaa 001081 tatgttcttt gggaacttgg ttgggtttta ggacctctag aggctacttc tgccacttgc 001141 taagtaactg ttttgtggaa tttgtttaca gatcacatta acaatggtga aggctgttgt 001201 tgtgcttggt agcagtgaga ttgttaaggg cactatccac tttgtccaag agggagatgg 001261 tatgccatca gtcatcacca ttttcatgat tgtcttgaat tgaattttag tccttgaatc 001321 gttgagattt actggcatgt ttgattctta ggtcccacca ctgtgactgg aagtgtctct 001381 ggcctcaagc ctggtctcca tgggttccat attcatgcac ttggtgacac caccaatggt 001441 tgcatgtcaa ctggtaatta ttattgttat tacatatata ttggcttctc gcctgcctag 001501 atgtaccatc aggattgata caggctatca tcatctgttg aattgattac ttatgatgca 001561 cttgtttcat aatgtagggc cacactacaa tcctgccgga aaggagcatg gagcaccaga 001621 agatgagacc cgccatgctg gtgatcttgg aaatgtcacc gctggagaag atggtttgtt 001681 ctttttccct ttattccgaa tttttatttg ttccatacct gttaatgatt taacataacc 001741 atattagttg tggtcttgta gtccttaact cattgtcaat ttgtagtaat actttattcc 001801 gaatttttat ttgttccata cctgttaatg atttaacata accatattag ttgtggtctt 001861 gtagtcctta actcattgtc aatttgtagt aataattgtt gctgagagtt tatttctctg 001921 ctgtcaggtg ttgctaatat ccatgttgtt gacagtcagg taagtaaaca ttcagaaaaa 001981 gaacattctc cgtcatttga tttatggaac caataccaca catcccctta ttattctgct 002041 gttaccttgt cttttccttc tttctttttc ctgtgtgtta acatggataa ccatttatct 002101 gtgtcagatt ccacttactg gaccaaattc aatcattggc agagccgtcg ttgtgcatgc 002161 cgatcctgat gatcttggaa agggtaatat tacagacaac tgtttgtgct catttatttt 002221 gtctgtgtgc ttgtgtgctc cttttcttct cttttgctaa ggaagatctc actactgttg 002281 ggtctatgat gacaacaatc actttctatt gaatggattg cataaacatg ctgagttagt 002341 agtcagaaat gtgtagggtc cttttgtttt atcataccaa gttgcacacg actgtgttgt 002401 aggcattttt acctttgggg gtaaaggata tctgaacttt acatggaaaa tttgaataag 002461 ttgttctgct atgccaggca ctatttgact tgaatctcct atctgtgcac ttcaccataa 002521 actatttgac ttgaatctcc tatctgtgca cttcaccata aacctatctg tgccaattct 002581 cattgcagtg agccagttat cagtgcagct taaataacat tcattggttt tggtgctctt 002641 ttaggtgggc acgagctgag caagaccacc ggaaacgctg gtggccgtgt tgcttgcggt 002701 aagttcagag gccgtacaat ccagcccacc tgaaaatcag cttcgtgtca catattgatc 002761 gactcaccac ttcatctcct tttctctaat tctttcccaa ttttacttca gggatcatcg 002821 gacttcaagg ctgaaacctg gaggtgtgaa ctcaccttcc atctcccagc accagaagcc 002881 tgaaactcta cgagctctta gccgtttcgt ctttacctga gtggctactc tagattctac 002941 aataagcacc tgatctctgc gcatggtttt tggtgtacca ttctgtcgcc cgcatcgttg 003001 gcgcccaatg aactatgtgt tttgtgttaa accttaagct gaagggtacc atttgtag |
Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.
| Hit Barley ESTs | ||
|---|---|---|
| Acc. No. | Clone Name | Length |
| BY840689 | baet48a03 | 424 |
| more... (Total Hit Count: 52 ) | ||
| Hit Wheat ESTs | ||
|---|---|---|
| Acc. No. | Clone Name | Length |
| CJ848369 | whatlal9d04 | 684 |
| more... (Total Hit Count: 749 ) | ||
