cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK060923     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os03g0843300 ( IRGSP 1.0 )
RAP - Chromosome No. 3
RAP - Location, Length 36,339,844 -  36,342,163  ( - );   2,320(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 36,339,844 -  36,340,176 ( - );   333 (bp)
Exon 2 Location 36,340,868 -  36,341,821 ( - );   954 (bp)
Exon 3 Location 36,342,076 -  36,342,163 ( - );   88 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 RNA Nucleotide
Accession No		 RNA
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os03g0843300 Os03t0843300-01 103277 001035H09 8964 LOC_Os03g62620.1 AK060923 5818 AK060923.1 32970941 BAG87622.1 215686361 NC_008396.2 297602023 NM_001058397.1 115456522 NP_001051862.1 115456523
Os03g0843300 Os03t0843300-01 103277 001035H09 8964 LOC_Os03g62620.2 AK060923 5818 AK060923.1 32970941 BAG87622.1 215686361 NC_008396.2 297602023 NM_001058397.1 115456522 NP_001051862.1 115456523
Os03g0843300 Os03t0843300-01 103277 001035H09 8964 LOC_Os03g62620.3 AK060923 5818 AK060923.1 32970941 BAG87622.1 215686361 NC_008396.2 297602023 NM_001058397.1 115456522 NP_001051862.1 115456523
Os03g0843300 Os03t0843300-01 103277 001035H09 8964 LOC_Os03g62620.4 AK060923 5818 AK060923.1 32970941 BAG87622.1 215686361 NC_008396.2 297602023 NM_001058397.1 115456522 NP_001051862.1 115456523


Chromosome: 3 ,  position: 36,339,844 - 36,342,163 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gcgtgcttct tcttcttctc tctctaaatt tctccattcc gctcgcgatc tccactcgct 
000061 tcgtccagat ctccgcatca acccacaggt aaagtaagaa aaaatcaatc tatgtttctt 
000121 tctacttgct ctcgcttcgt tttggaggat atttgtgcct cagatcttgt tgccgtgtgt 
000181 agcctagccg tgtagaatag gaaagagaaa agaaagcaat ctttcttgtg atcaagtctt 
000241 tggtgattct tgtggagtta gcaatggcgt gcgatctgtt tgcttgattt gatcttgctg 
000301 tgagatcttg attcgatcgc ttgttgttgt tgctacctga agttagcgag catgtcgtct 
000361 tcgtcggaga accccacggt gacggagcgt ggcggcggga aggaccgccg ggacgacgac 
000421 ggcggcgaaa agaaggaagg aggcggggga ttcatggaga aggtgaagga cttcatccac 
000481 gacatcgggg agaagatcga gggggccgtc ggcttcggca agcccactgc cgacgtctcc 
000541 ggcgtccaca tcccgcacat cagcctccac cgcgccgacc tcgtcgtcga cgtgctcatc 
000601 aagaacccta acccggtccc tatcccgctc gtcgacatcg actacctcat cgagagcgac 
000661 ggccgcaagc tcgtctccgg cctcatcccg gacgccggca caatccacgc ccatggcgag 
000721 gagaccgtca agatccccat ctcactcatc tacgacgaca tcaagagcac ctacaacgac 
000781 atcaagcccg ggagcatcat cccctacctc gtcagggtcg tcctcctcat cgacgtcccc 
000841 atcatcggca ggatcaagct ccccctcgag aagtccggcg agatccccat cccctacaag 
000901 cccgacgtcg acgtcgagaa gatcaagttc cacaggttct ccttcgagga gaccaccgcc 
000961 acgctgcatc tcaagctcga gaacaagaat gacttcgacc tgggcctcaa catgctcgag 
001021 tatgagatgt ggctcggcga cgacagcgtc gccagtgccg agctcaccga gtcggcaacg 
001081 atcgagaagc aagggatcac caccatgcag gtcccattca gcttcaggcc caaggatttc 
001141 ggctctgctg tctgggacat gatcaggggg aggggcactg gctacaccat caagggcaag 
001201 atcgatgtcg atactccgtt cgggaacatg aagctgccca ttagcaaaga gggtggaacc 
001261 actcgcatca agaaggatga cgatgatgac gatgaggtat tatgcattgc ttttgcttgc 
001321 tgtctcttga tttaccatcc agtaaatcta catcttgttg gttaaattgc aattcaatca 
001381 tatagcagta gaccaggtta gtcatgttgt ttgactagaa aggcagttga aggccaagaa 
001441 tagatcttgt aggtacaatt ttacttttca gctcaggagt ccactagttg agcttctcgg 
001501 atccgatttc gacataatct tggtagttac aatagagttt ctctatgcat ttctcttcca 
001561 ttatactgaa agttgatcaa tcaagcattg ttcttgactc tcatagagct cgctagtcat 
001621 ttactgaagt tgttgtgcta cattggtgtt tatctctgtg gcaaataatc agtgtatctg 
001681 tagcattcta ttcaaatgta ggatatgcaa ttcaaccaag atctgttttt cataagaatc 
001741 tcagatagca aaaaactgtt agaaatttta gctgaaatca tggtatccat tcatactttg 
001801 gaaaaccaag ccatatcaca gtatgtcaaa agagaagtgt aagatagtgc aggttcccag 
001861 ttacagtagt attatgtatg tcgatccatc tgaaatagat tggagggtgg tggctccaaa 
001921 ttctttctag caggcatgct tctgctgtgg caccttacta atatcattct ctgaattacc 
001981 tttacaggat tgaagttgtg ctgataaaac atacagggta gggaagcaga gatggtgatg 
002041 ccctgtgctc tgaagcatat ggtgctattg ttggctgcct tatctgagct gagccgctgt 
002101 gttgtgttgt tactcatcta gctgcctccc gttattttgt tcatgtttat tagactcggg 
002161 acaacttaat ttgtggtgga aaccttgata ataaaatcaa caggcccttg ttctttgtgg 
002221 ggtcagttga tatttttcgt tatgttttcc ccaaatactg gttgtgaggg cgaatgctgt 
002281 tcaggaacct gttccaatgg taaactgaag aatggttgtc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK251906 FLbaf138p10 1527
more... (Total Hit Count: 33 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ851802 whsctal1l17 730
more... (Total Hit Count: 153 )
/rice/oryzabase