cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK060709     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os03g0717700 ( IRGSP 1.0 )
RAP - Chromosome No. 3
RAP - Location, Length 29,867,060 -  29,869,541  ( + ) ;   2,482(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 29,867,060 -  29,867,147 ( + ) ;   88 (bp)
Exon 2 Location 29,867,586 -  29,868,101 ( + ) ;   516 (bp)
Exon 3 Location 29,868,722 -  29,869,541 ( + ) ;   820 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os03g0717700 Os03t0717700-02 001030H10 102995 001030H10 8869 LOC_Os03g50860.1 AK060709 9308 AP008209.2 255674134 BAF12997.2 255674844 NC_008396.2 297602023 NM_001057618.1 115454964 NP_001051083.2 297601588


Chromosome: 3 ,  position: 29,867,060 - 29,869,541 bp

   Now loading


#
#
Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 aaaggcttgg aatcacttct gaagttgttg gtaccattga tccgacattt ggtgtgttgt 
000061 ctgggagaaa tggcagttct ctaaccaggt acttctatct tctacattcc tttcaaaaaa 
000121 ttgaaatcct ggagttaata ggctactttt ctctggaaat tagaataaac ggagcatgct 
000181 tgcatactaa cttcttatgc aaatatcact gttctatgta taaatgatta cacgataatg 
000241 attgtttttt ggtaagtatt actgggtaat acttggccat catagttctt gcctttattt 
000301 tgtatcactt cggtatattg ctacttctgc ggcagttctc tttacgctac cgaatgtgat 
000361 atatttaatt gaaaattgat tttattttaa tctgtgaaaa gaacattttt ttaaggcccc 
000421 acaattctca aataactagt aagctgattg cagatgatat ttgaactatc ttgacaccca 
000481 gttttttttt ttaatctaac tcgttttgtt ccaaatttgt tgtcagcatt ggtaagaagc 
000541 agccatgcat gttgctaatc gagagtgatt cctggggacc acagatggat gtctccttac 
000601 atgctagact tcaggagatg aaacagagtg atcgcataca tgtattgccc aaggttttcc 
000661 ttctttctgc tgcagaatca gacaaagtaa agaagataca tgcagttgat tctgtgatac 
000721 caaagcctct gaaagcaagt gcacttgcgg cctgtctgtt ccaagcactt ggtatcacac 
000781 agccgagcca tgagaaacgt gacgattcag gttctcttca tgggcgtgat ggttcaggtt 
000841 ctcttcatgg gttgcttctt ggcaagaaca tattggtagt tgatgacaac aaggtaaacc 
000901 tcagagtggc cgctggtaca ttgaagaaat atggggcaaa ggtggagtgt gtggagagtg 
000961 gaaaagatgc tctttccctt ctacaagtgc cgcacaagtt tgatctgtgt ctcatggaca 
001021 ttcagatgcc ggagatggat gggtaagctt atgtcccgtt caagatttat ttcttttgaa 
001081 tttgagcctt ttatttcata tgatccaaag cgtgacatgt catctggata agtgccacct 
001141 cgttgactat caatttattc acgcaatgaa tcaggctttc tgcctctttt tgaagaaaaa 
001201 aaaaatgtta ttcacacttc gtggttaatg gaaacaagca tatacattgc tgacgccaaa 
001261 tactgattat aactagtaaa aatgtcagtc ttgtgttagt tttttatgtg cgaaaaatgc 
001321 cgtgtctaat tcattatgtg aaaattttca aagacattag ccctgatatc gtcctgcatt 
001381 atgccaaaca gtactttaaa tattaatatc agaaggtcta aaatccgtgc agttaccatt 
001441 tgttcattgt agttttaacc atcatactgc aatatgcagt tcttgggcta atgaacataa 
001501 tggtgtgcta acaccctcat gaccaattaa cttatgtctc ttgaacactt gctgcatatt 
001561 gacatctctg ttcctatatt ttctgaatag taaccaagta atgtcaaacc atgtcattat 
001621 tttgtcttcg tttaatcaac atagttttgc ttcatgtgct agatttgagg caactcggca 
001681 aatacgagca atggaaggga aggcaaatga gcaggcagac gacagcgaat cgggttcaga 
001741 aatcgcagca aagacggcca aatggcactt gccaatcctg gcaatgaccg ctgatgtcat 
001801 ccaggccacc cacgaggaat gcacaaagtg cgggatggat ggctacgtct cgaagccctt 
001861 tgaggagaag cagctcttcc aggcagtaca gaagttcttg ggcccatgcg tttccagctg 
001921 acaccaaccg atgcattctg ctgtacacca agagagtaaa gaatgagcac tgactgtgaa 
001981 ctgaggcggc taaaattctt ctccattttg ttgctcttca acagaggatg cgatctgaat 
002041 gagagcctgc actcaaggcg acattgcaca gaaaggatcg gagccttcat tgtgtacatg 
002101 tatttttatc ggcagagacc aagagctata gttttaagct aggagaagca taagttttag 
002161 ggtgacatgt ccggcctcct gttatcggag ccacaggtgt gttgctgggc tattggaatc 
002221 ttgagcaatt tttttttcct gtacagctcc cacgattttt cggctccagc ccactgttga 
002281 cagaagacat gtttgcaggg tgcagcatct tggaaaaacc tgataacctg agaatttttt 
002341 gttgtgtcat tctgtgtgca gtatattaga atttgagcag tattgtatat caatgtacca 
002401 tcggtgtatg gatgtgaaca aggaaggcga aacctgtgat taggacactg attaaaactt 
002461 gcactcgttt tttccatccc gt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BJ473186 baal38p18 721
more... (Total Hit Count: 6 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ550053 rwhhg12d16 893
more... (Total Hit Count: 9 )
/rice/oryzabase