cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK060527     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os03g0183000 ( IRGSP 1.0 )
RAP - Chromosome No. 3
RAP - Location, Length 4,348,172 -  4,349,529  ( - );   1,358(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 4,348,172 -  4,349,061 ( - );   890 (bp)
Exon 2 Location 4,349,171 -  4,349,529 ( - );   359 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 RNA Nucleotide
Accession No		 RNA
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os03g0183000 Os03t0183000-01 102792 001020F02 8718 LOC_Os03g08470.1 AK060527 24332 AK060527.1 32970545 BAG87480.1 215765783 NC_008396.2 297602023 NM_001055712.1 115451152 NP_001049177.1 115451153
Os03g0183000 Os03t0183000-01 102792 001020F02 8718 LOC_Os03g08470.2 AK060527 24332 AK060527.1 32970545 BAG87480.1 215765783 NC_008396.2 297602023 NM_001055712.1 115451152 NP_001049177.1 115451153
Os03g0183000 Os03t0183000-01 102792 001020F02 8718 LOC_Os03g08470.3 AK060527 24332 AK060527.1 32970545 BAG87480.1 215765783 NC_008396.2 297602023 NM_001055712.1 115451152 NP_001049177.1 115451153


Chromosome: 3 ,  position: 4,348,172 - 4,349,529 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 acaaaggcat tcgcaacaca cacttgaaga aaaaaaacac gacgaacacg ttaaaaaaag 
000061 gtcgaagaga agtgggagac ccaaaccgcg aacaatgtgt ggaggcgcca tcctcgccga 
000121 gttcatcccg gcgccgtcgc gcgccgcggc ggcgaccaag cgggtgaccg ccagccacct 
000181 gtggccggcc ggctccaaga acgccgcccg cggcaagagc aagagcaaga ggcagcagag 
000241 gagcttcgcc gacgtcgacg acttcgaggc cgccttcgag cagttcgacg atgactccga 
000301 cttcgacgac gcggaggaag aagacgaagg acacttcgtg ttcgcgtcca aatctcgtgg 
000361 taatgttcgt cgcgtgcgat ctcgtctagg tgttcgatcg tgatggcgat gagttcttgg 
000421 cttgatctca ccgaggaaga ttggtttggt ttggttttgt tcgtgcagtc gtcgccgggc 
000481 acgacgggcg cgcggcggcg agggcggcga gcaagaagaa gcgggggcgg cacttccgag 
000541 gcatccggca gcggccatgg gggaagtggg cggcggagat ccgcgacccg cacaagggca 
000601 cgcgcgtctg gctcggcacg ttcaacaccc cggaggaggc cgcacgcgcc tacgacgtcg 
000661 aggcgcgccg cctccgcggc agcaaggcca aggtcaactt ccccgccacg cccgccgccg 
000721 cgcgcccacg ccgcggcaac acgagagcca ccgccgtgcc accgccggcg acagcacccg 
000781 ccgccgcccc gccgcgcgga ctgaagcgag aattctcgcc gcctgctgag accgcgctac 
000841 ctttcttcac caacggcttc gtcgacctga cgaccgccgc ggcgccgcca ccggccatga 
000901 tgatgacgag ctccttcacc gacagcgtcg ccacgtcgga gtccggcggg agccccgcca 
000961 agaaggcgag gtccgacgac gtcgactcgt ccgagggcag cgtcggcggc ggcagcgaca 
001021 cgctgggttt caccgacgag ctggagttcg acccgttcat gctgttccag ctcccctact 
001081 ccgacggcta cgagtccatc gacagcctct tcgccgccgg cgacgccaac agcgcgaaca 
001141 ccgacatgaa cgccggcgtc aacctgtgga gcttcgacga cttcccaatc gacggcgccc 
001201 ttttctgatg tactcctcca ttgatgcagt ttgtgcactc aattgtaagc atctgaattc 
001261 acttccattt taatggattc agttaaaaac ttaaaatcca tctgttcatc aggattatat 
001321 atcttgatca gataccatgc catttcttgg ttcaggtt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK248243 FLbaf2j07 1472
more... (Total Hit Count: 3 )
/rice/oryzabase