Update info.cDNA ( Data source : RAP-DB )
cDNA Detail
jump to Other species ESTs data to homologous Rice cDNA
| General information | |
|---|---|
| RAP - Accession No. | AK060467 Link to RAP-DB ( IRGSP 1.0 ) |
| RAP ID | Os03g0752100 ( IRGSP 1.0 ) |
| RAP - Chromosome No. | 3 |
| RAP - Location, Length | 31,818,467 - 31,820,753 ( + ) ; 2,287(bp) |
| Exon (Data source : RAP-DB) | ||
|---|---|---|
| Exon 1 | Location | 31,818,467 - 31,818,567 ( + ) ; 101 (bp) |
| Exon 2 | Location | 31,818,854 - 31,818,980 ( + ) ; 127 (bp) |
| Exon 3 | Location | 31,819,374 - 31,819,667 ( + ) ; 294 (bp) |
| Exon 4 | Location | 31,820,226 - 31,820,753 ( + ) ; 528 (bp) |
| Related Rice IDs | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| RAP Locus | RAP ID | RAP Annotated Accession No |
KOME Clone ID |
KOME Clone Name |
KOME Cluster ID |
MSU ID | cDNA Accession No |
RiceXPro FeatureNum |
UniProt Accession No |
UniProt Entry Name |
| Os03g0752100 | Os03t0752100-01 | 001012D07 | 102722 | 001012D07 | 8669 | LOC_Os03g54084.1 | AK060467 | 6926 | Q10CQ8 | PHYC_ORYSJ |
Chromosome: 3 , position: 31,818,467 - 31,820,753 bp |
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| Sequence (Data source : RAP-DB) | |
|---|---|
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Nucleotide
Fasta Format |
000001 taaagaggga agatgcagta gataaattgc taatcgggga agttttcacc caccatgagt 000061 atggctgtag ggtgaaagac catggtactc tgaccaaact tagcatatta atgaacacag 000121 tgatatctgg tcaagatcct gagaagcttc tttttggttt cttcaacacc gatggcaagt 000181 acatagagtc actgatgaca gcaaccaaga ggacagatgc tgagggtaag atcactggcg 000241 ccctttgctt tcttcatgtg gccagcccag agcttcaaca tgctctgcag gtgcagaaga 000301 tgtctgaaca agctgctatg aacagcttta aggaactgac atacatacgt caagaattaa 000361 ggaacccact caatggcatg caatttactc gaaatttgtt ggaaccttct gacttgactg 000421 aggagcagag gaaacttcta gcatcaaatg tcctctgtca agaacagctg aaaaagattt 000481 tacatgacac tgatctagaa agcattgaac agtggtgagt gccgtttgtt ccactgtagt 000541 ctgacatata gatatttgcc aacttttatt ctgagccctt ccattgttct tgaaatcacg 000601 ctttaatgat ttttaaccat agcaaattta gatggtcttg cagattcaga actgaaatca 000661 ccactgtttc atgccttttc tccaattata tagtctatat gtagaacaac atgatatgta 000721 aaaaaggaaa ctttctattt agtggttgga attaacctat acacggaaaa ttccattggt 000781 accataacag ttccagcact acaaaataag ttcatataaa gctgtataat atgcctattc 000841 catttgcttt tttcacgcac aagatctgat agaatacgta ttggttacta actctgtgct 000901 cccacagcta cacggagatg agcaccgtag atttcaacct ggaggaagcc ctgaatacag 000961 tcctaatgca agccatgccc cagagcaagg agaaacaaat ttccattgac cgtgattggc 001021 ctgcagaagt atcatgtatg cacctctgcg gggacaattt aaggcttcaa caagtcctag 001081 cagacttcct ggcatgcatg cttcaattta cacagccagc tgaagggcct attgtgctcc 001141 aagtcatccc caggatggaa aatattggat ctggaatgca gattgctcat ctagagttca 001201 ggtaagccac ccatttgcct tgtggaactt atagtgatgt ttcttgaact gcaagtacag 001261 ctttactggt aatagaacca acttaaactt tgcatgcaat gacctaattt ccattactcc 001321 aactcaactt ctctggggag aaatctgttt gttaacatgc gttcagtaag tactagaggc 001381 gcactattga gttccagaca cctttattcc tgcagcttgt gtttactgtc catcttatca 001441 atagaggcag gacactcagt agtcacataa aaactgacgg ttcaaaatag gccttccata 001501 ttatctcaac ataaacatag cataaacata aaatgcaata tcgtaacatc tgagtaatga 001561 ctatataacc aattcaatga tgcaaccctt acaactattt aagataacgg ataacccggc 001621 cgacaaccct taaaactgtg agtaaaagga gattgattag atgatgcgaa gctttagatt 001681 gttcgacgag cttgctgggg cacaacccca cttaacagaa gcgtaatcta acatctgccc 001741 aacggttggc tccatgcagg cttgtccatc cagctccggg cgttccagag gctctgatac 001801 aagagatgtt ccgccacagc ccaggtgcat ctcgagaggg ccttggcctt tacataagcc 001861 agaagctcgt gaagacgatg agcggcacgg ttcagtacct ccgggaatca gagagctcgt 001921 cgttcatcgt cctggtagag ttcccggtcg cccagctcag caccaagagg tgcaaggctt 001981 ccacgagtaa attctgaact tagggctatg gccaaaattc ttgtgggtgc tgtattgttg 002041 ttgttgctgc tgctgctatt agcagatcag gcagtctgag gagtacgtta gctgaagatg 002101 tatcagatgt gtgtagcttg tgaaagtgaa ggtagtggtt ggatagatgt atttgtcacg 002161 ttgatgtctg gagagctagt gagcgagcta ctaggtgtta gtgtaattta accggcaaat 002221 gtatgaacga attatgaata aaatcttcac ttgtgttgtc atgaataaaa tcttcacttg 002281 tgctgtc |
Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.
| Hit Barley ESTs | ||
|---|---|---|
| Acc. No. | Clone Name | Length |
| BJ466154 | rbags28o23 | 685 |
| more... (Total Hit Count: 4 ) | ||
| Hit Wheat ESTs | ||
|---|---|---|
| Acc. No. | Clone Name | Length |
| CJ804618 | whsct31b09 | 694 |
| more... (Total Hit Count: 18 ) | ||
