cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK059068     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os03g0414400 ( IRGSP 1.0 )
RAP - Chromosome No. 3
RAP - Location, Length 17,804,478 -  17,806,177  ( - );   1,700(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 17,804,478 -  17,804,878 ( - );   401 (bp)
Exon 2 Location 17,805,890 -  17,806,029 ( - );   140 (bp)
Exon 3 Location 17,806,117 -  17,806,177 ( - );   61 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os03g0414400 Os03t0414400-01 101019 001021H01 7640 LOC_Os03g30092.1 AK059068 20948 AP008209.2 255674134 BAF12276.1 113548833 NC_008396.2 297602023 NM_001056897.1 115453522 NP_001050362.1 115453523


Chromosome: 3 ,  position: 17,804,478 - 17,806,177 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gagctgagag ccaaccacca cgctgctgct ccgccgctct ttctcccgtg gtgaacgaaa 
000061 ggtaaccgcg cctgcacaat tccgatactt tcgcaatttt ctctcatctt cccttcaaat 
000121 tcgagcttac aattccctct ggaagtagaa ggtggttgga ggggggcatc cgagcatgga 
000181 ggggctgacg tccagcgaga tcgccggctt cggggtggga gccctgctgg tgtgcgccac 
000241 catcgccgcc cagagagtcg acggcttcat cgcctcctcg cagagaacgt acactaaatt 
000301 ccctcatcat cttttttttt tctttctccc tttctttgtc tgactccaag ctaactactg 
000361 ttagttcctc agcgtctcca acacgaatct gaattttatc ctttgtacgg aacagtaatc 
000421 tgatttgttg gtaggctaga ctgctagtac aacatggagt agtcaccaac agtaaaaaga 
000481 tgggaaagtg caaatcttat agcggtcaca ttaggggctg tttggtttac agggacttat 
000541 tctaagtcca tgtcacatcg gatgtttgga cactaattta gagtattaaa tatacactaa 
000601 ttacaaaacc cattccataa gcttggacta attcgcgaga cgaatctttt gagtctaatt 
000661 acgccatgtt tttgacaatg tgatgctaca gtaaactttt gataattatg gattaattag 
000721 gcttaaaaaa tccgtctcgc ggattagctc tcatttatga aattagtttt tttattagtc 
000781 catatttaat actctaaatt agcgtccaaa catccgatgt gacatgggct aaaaagtttt 
000841 agccccatct aaacaccccc ttagtagctg ttagttttca ccggtggtta ggctgctcag 
000901 tgattttgat ggctagcgtg cccagatttc atttttgtgg ccttagttgt gctggtagct 
000961 agccatcttc agaattgcga acacgatggg ttttaggggc agagcttgac atgtgttttt 
001021 caactgaata actcctgggt ggtcactctt tcaagacaca tggtttttgc atgtgaaaaa 
001081 atttaacatc gatgtattac tactcaattg aaagtgtact tcctttttcc tctttatcat 
001141 tagttcacta gtcaatacat tctttgggcg agttggcctg catttgtgga ataacaaaaa 
001201 ggccttctac actgaatatt tttcttcata ccaagttctt ctcaaaactt aacccaagca 
001261 ttctcatttt gtttaataaa tgtaaatatg tattgacagg tcattgggca tgtgcaagaa 
001321 gtgcggtgat cttcgtattg tggcttgctc acaatgcaaa ggagtaggtt ctgttaggaa 
001381 aggaggacta ttcacatttg gcatgctaga tgatatttat gaatcacttg gagctgaaac 
001441 aaagacaagt aacttggttc cttgcacaaa ttgccgttct aaaggccgcc ttttgtgtcc 
001501 agagtgctcc aaggttaggt gattcagttc tggtgatgta cagagataca attttctatc 
001561 accacacatg taggtgttgt ttcagaactg tggtttaaga tatactatat catcttcatc 
001621 aaagaattat ggcatgtact gaactaagga tgcttattcc attttctttt acaatttgat 
001681 tgaaagaatt aagccatatt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ662920 whkp14j07 690
more... (Total Hit Count: 2 )
/rice/oryzabase