cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK059011     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os03g0234200 ( IRGSP 1.0 )
RAP - Chromosome No. 3
RAP - Location, Length 7,150,181 -  7,152,286  ( - );   2,106(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 7,150,181 -  7,150,382 ( - );   202 (bp)
Exon 2 Location 7,150,658 -  7,150,724 ( - );   67 (bp)
Exon 3 Location 7,152,233 -  7,152,286 ( - );   54 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 UniProt
Accession No		 UniProt Entry
Name
Os03g0234200 Os03t0234200-01 001020H11 100955 001020H11 7596 LOC_Os03g13170.1 AK059011 40920 P0CH34 RL40A_ORYSJ


Chromosome: 3 ,  position: 7,150,181 - 7,152,286 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gtcgcttcag gcgcttgccc gcaagtacaa ccaggacaag atgatctgcc gcaagtaagc 
000061 tacaaacttc tcaccaaatc atcttacttt acttttatcc agccatacaa catattcgtt 
000121 cctttcttga tgctatggat agtggtagca tgtttataag caggctagct agccagcgcg 
000181 tttctcctgt acttgtgccg tttatctttt gagtatatgg aattgcgttc gtcaggaatg 
000241 gagccaaaac ctagagacac atttttattc agccttggaa taaaaaagat aatattttta 
000301 ttgtttcgtt acttatttgt ggtgcactct tctagcttta aagataagtc acttcggtca 
000361 ccattaagtg gacctgaagc tttcttttct gaagagatgc aagataaatt atggggacct 
000421 ctggacatgc ggcttcttcc agtagattct cgcattttct cgtaggtcca acacttatat 
000481 aacattttat cccctacttt cagctatttt gtgagcatca gagtagcaaa aaacagttat 
000541 ttggctcgat gatgactact cttgctttaa ccacaccgaa tttgaagacc ggaggaagtg 
000601 taaaatctca tttctttcat tactctttgc tcttccttct cggtgattcc ttatgaaatc 
000661 tcttcctttt ggtgaagaac tactacggaa tttattttcg tagtttttgt cctttatcaa 
000721 aagattgcga ttgaaggatg cagcgagata gtggagcata gtgtaaaagg aagtgggaag 
000781 ctatcttctg atggatcttc atgtgtggaa aactttggcc tagactgaga gccatcaatg 
000841 taaatgccct tagatttttg ctgtggccat cagttctggg cacattgtct tcatagatac 
000901 tccggaagag tgtaagactc tggaagatgc accatgcacg gccaaagaat ttccatgttg 
000961 gcatgttcta gacagctatt atttggttta gtcttttgtg ttattttttc tgtgttttat 
001021 gtgtcgagtg tgctactttt ctacctggca gtagtgatga atcaattaga tgtgtgaagt 
001081 gaccttatga acttaacttt tgaggcatac attctgtctg aactgccata tgtacttctc 
001141 ttcatagttg caaattgcag tgcctatttg ctttgttcat tcttgttatt tttggttatt 
001201 gattatcggt gtgtgaattt ggttttcttt atttgtttgt atggacagtt ggtccttttt 
001261 taattggcag gaatgatgaa tcaattagat gtacgaggtt accttatgag ctaaaatttt 
001321 gaggcataca attgtctgac ttgccaatct actgttgtat ttcagtgttt cgttacatgt 
001381 ctgtggtcca tgttctctta ttttcaattg cctatgtatg tgcatgcttt tatttgacat 
001441 gctatttgca acttttcatg ctgtacataa ctcccaaggg gtcatgtttt atatttctgt 
001501 atgtatcttg gactgtaaaa aaacaaattt taactttgac cgaccttgtt atttatctac 
001561 agatgctatg cgcgcctgca ccctagggct gtcaactgcc gcaagaagaa gtgtggtcac 
001621 agcaaccagg tgagcttgat gattgatagt ggggcttact attattttac agtagtcatg 
001681 caattcagtc catcttctgg ttacccttta ggaattgtta tgatgattgg atggaagtag 
001741 ggttttcata tgttctagat ttgttatttg tgcctttaag cttgtaaata atggccatgg 
001801 catttgctag catgatttca ataacatata ccataacata tcaacatacc ctttttattt 
001861 tggctgtttg atctaacgaa aatttctggt ccttccactt tcagctgagg cccaagaaga 
001921 agatcaagaa ctagagcgtc actcgccggg ttcatggact ggttaaatca atcgtcatat 
001981 tagactttta tgcttccgtt gttatctccc tggatgttgt tgaaccgtgt tttactgtgc 
002041 tggatgcttc agcttcttgt tttgacggtc gtggtatatg gtaattggca gcaaactata 
002101 ttggtc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AV919140 rbags4l03 513
more... (Total Hit Count: 17 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ828392 whatlal26d01 535
more... (Total Hit Count: 532 )
/rice/oryzabase