cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK120237     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os02g0120600 ( IRGSP 1.0 )
RAP - Chromosome No. 2
RAP - Location, Length 1,078,475 -  1,079,650  ( + ) ;   1,176(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 1,078,475 -  1,078,630 ( + ) ;   156 (bp)
Exon 2 Location 1,078,758 -  1,078,885 ( + ) ;   128 (bp)
Exon 3 Location 1,079,016 -  1,079,120 ( + ) ;   105 (bp)
Exon 4 Location 1,079,228 -  1,079,650 ( + ) ;   423 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os02g0120600 Os02t0120600-01 214956 J013043N18 20512 LOC_Os02g02830.1 AK120237 42874 AP008208.2 255670529 BAF07625.2 255670554 NC_008395.2 297600179 NM_001052246.1 115443862 NP_001045711.2 297598491
Os02g0120600 Os02t0120600-01 214956 J013043N18 20512 LOC_Os02g02830.2 AK120237 42874 AP008208.2 255670529 BAF07625.2 255670554 NC_008395.2 297600179 NM_001052246.1 115443862 NP_001045711.2 297598491


Chromosome: 2 ,  position: 1,078,475 - 1,079,650 bp

   Now loading


#
#
Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 atcgaaacaa aacattcttc agttgatctt gagattaagt cactcctcca tcccatctca 
000061 agaactgatc aaggaaagga aaaaaaatgg cactgaggag aataatcaag gagctcaagg 
000121 accttcagag ggatccgccg acttcctgca gcgccggtga tacgcaaatc tttgcattac 
000181 atcctgaaaa tcttcagata gaaatgttca gaaacaaaat caagaagatc tattgcatta 
000241 aattttctca ttgttgttga tgaattggtg aaaattcaat cagggcctgt gtctgatgac 
000301 atgttccact ggcaagcaac aatcatgggg cccaatgaca gcccctactc tggaggagtg 
000361 ttcctggtga ccatccactt ccctcctgac taccctttca agcctccaaa ggtatgtgct 
000421 aactaagcaa acatcacttg tctatcataa ttcaatcaag attcaagaag ttgatgaaac 
000481 ccaatcatga aatgaaaaat gaagcgtctg attgactcat tgattgggat cttgggagca 
000541 ggtggcattc aagaccaagg tgttccatcc aaacataaac agcaatggca acatctgcct 
000601 tgacatcctc aaggaccagt ggagcccagc tctcaccatc tccaaggtaa ttaacaacac 
000661 aagaacaaca tcatcatcag cagcagcatt gtgaattggt aatgaactga tgatgattaa 
000721 tagtggatgg taactcactc ataattggtg caggttcttc tgtcgatctg ctcgctgctg 
000781 acggacccga acccggacga tccgctggtg ccggagatcg ctcatatgtg caagactgat 
000841 cgcctcagat acgaatccac cgcaagaggc tggacgcaga agtacgccat gggctaagct 
000901 tagctgcaag ctagctaatt gcagctgaaa tggcaattgg atttggattt ggatgcaggg 
000961 gacaatcagt caatcaccag catgtcgatt agaattcaga aatatagatc gtgccataaa 
001021 aaaagatagt aataattctt gcttgcaatt attaggattg ttgttgcaaa tctgaatcat 
001081 cgttatcatc taacctataa tcaaaaacca tcgtcttctt ggtgaggagg aataataaaa 
001141 gtctgcgatt ttgacggaat tattgttcgt cagaag

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AV936788 rbaal7c19 640
more... (Total Hit Count: 133 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ665225 whkp2m23 700
more... (Total Hit Count: 920 )
/rice/oryzabase