cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK108711     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os02g0550800 ( IRGSP 1.0 )
RAP - Chromosome No. 2
RAP - Location, Length 21,561,074 -  21,564,314  ( + ) ;   3,241(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 21,561,074 -  21,561,352 ( + ) ;   279 (bp)
Exon 2 Location 21,561,544 -  21,562,296 ( + ) ;   753 (bp)
Exon 3 Location 21,562,376 -  21,562,661 ( + ) ;   286 (bp)
Exon 4 Location 21,563,764 -  21,564,314 ( + ) ;   551 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os02g0550800 Os02t0550800-01 002150A12 111564 002150A12 18123 LOC_Os02g34580.1 AK108711 34661 AP008208.2 255670529 BAF09011.1 113536628 NC_008395.2 297600179 NM_001053632.1 115446634 NP_001047097.1 115446635 Q69T29 AMT33_ORYSJ


Chromosome: 2 ,  position: 21,561,074 - 21,564,314 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 actagtactc cctccgtccc aatataagtg catttaggac aggatgtgat atatcctagg 
000061 actacaaatc tggacagttg tctgttcata ttcgtagtcc taggatatgt cacatactat 
000121 actaggtgta tttatattgg gacggaggga gcagtactta aagtatattt gcaacttttt 
000181 actgaacttg gtgtgctgtg tcaggcgact actccagagg attgattact tcatgccttg 
000241 acaatgatgt gaagtagcat gaccttgcga ttcatatggg taagcttaat tatcaaaaca 
000301 gaattgcagt taagtagtaa gatcacagca ctgcacgaag caaaactttc aaaatattat 
000361 actcgtgcaa gtacaagcca gttagtacca ataggaatat atacttgcat catgcccaac 
000421 tccagagttt aaggtcgttt tgagagttga gacagcttac ttgtttgtag tcggggatcg 
000481 aggcatatat acacccaacc cagttcattg agtgatcagt agagagattc ttcccctctt 
000541 ctcctgccag ctcttccagg ttctgagttc tgaccatggc ggctggagcg attccaatgg 
000601 cgtaccagac cactccgtca tcgccagact ggctgaacaa gggcgacaac gcatggcaga 
000661 tgacatcggc gaccctcgtc ggcctgcaga gcatgccagg gctggtgatc ctgtacggca 
000721 gcattgtcaa gaagaagtgg gctatcaact cggcgttcat ggcgctgtat gccttcgctg 
000781 ctgtctggat ctgctgggtt gtctgggcat acaacatgtc gttcggcgac cgcctcctgc 
000841 cattctgggg taaggcacgg ccagcgctcg ggcagagctt cctcgtggcg cagtctgagc 
000901 tcactgctac cgctattcgc taccacaatg ggtcagctga ggcgcccatg ctcaagccgt 
000961 tgtacccagt cgccaccatg gtgtacttcc agtgcatgtt tgcgagcatc accatcatca 
001021 tcctcgcagg ctcactgctt gggcgcatga acatcaaggc gtggatggcc tttgtgccgc 
001081 tctggatcac cttctcttac acggtctgcg ccttctcgct ctggggtggc ggtttcctct 
001141 tccagtgggg tgtcatagac tactctggtg gctatgtcat ccatctctct tctggcatcg 
001201 caggcctcac tgctgcctac tgggtacggc aaagatctct ctctggttaa attcaccatg 
001261 ccacttctgc atctatgatt tctgacatct cgcaccatgc aggttggacc aaggtcagca 
001321 tcagataggg agagattccc gcccaacaac atactgctgg tgctagcagg ggcggggctg 
001381 ctgtggcttg ggtggacagg tttcaatgga ggagacccat attcagccaa tattgattca 
001441 tccatggcag tgctcaacac acatatctgc gcatccacca gcctactcgt gtggacaatc 
001501 ctggatgtct tcttcttcgg gaagccatcg gtaattggcg cggtgcaggg catgatcact 
001561 ggcctggtat gcatcacccc tggtgcaggt gagaagcctc cccttcctcc attagcaggt 
001621 ggactagctc agctaagacc aaccccttaa aatattgcaa tttgcatcag taccttgtca 
001681 ccataggaat caattgaaaa gtctcaaact aaagaaaaac aagcaatagt accttcagcc 
001741 aatcaggtct gcatctgacg aagtcaatac caagaatcca ataccagcat cttctataac 
001801 ctgcacagta ttgtttgcat tgaaaaggaa aagaaatgct ttttttttaa ttccagtgct 
001861 ggtgcttact acagcatcaa tggccttaag gaacacagct aattttatta gtgtatattg 
001921 taatcttgtt ttctctgatg cgacactctt gctactaagt taccagcaaa gggcatctat 
001981 tgacccaggt ttttaaaaca tgtgccagtc agaatccatc catttagcac tactgattga 
002041 ttattttatg agaaatggat tcagctgctg ttcacaaact actattttgc tttcataaat 
002101 gctaaactaa cttgatccat tgtgtaagaa agcctctgtt ttgtcccaag ttcgactaat 
002161 tttgttttgg ctctccttgg cttagaaaat ttatgtgtca ctttctatct tatgcaagga 
002221 taattatcaa ccatgactga ctgaacatga tgctgacctt gggttttcta ccaaattgcc 
002281 ttaggaagct agcaactttc ctgattggtt tcaacataga ggaataatgc cttctagtaa 
002341 ttaaattgag ttaattgtta tgtacaagct cgtttctttt attctctgga ccaggcacac 
002401 ttttgaaatt ttacaggttc aatattcaaa cctatccacc cacaaaatgt gtgctagcat 
002461 gcacaaacac ataggaaaca ataacattcc atgtcaccat tttagatttg ttcccctgag 
002521 tatcataaca ataaacaaaa cagaagaagt aaagatacga gacagaaaaa aaaaacaatg 
002581 tggagttcaa caattttcat gctaggtgtg aaagtatgta aatatgtggt tattttgcca 
002641 ttttaattgt tcagcaaaga ctaactagat gtgtcctgat tcatgaacag gcctggtgca 
002701 aggttgggca gctattgtga tgggaattct ctctggtagc attccatggt acaccatgat 
002761 ggtgctgcac aagaaatggt cattcatgca gaggattgat gacacgcttg gtgtcttcca 
002821 cacccatgcg gtggctgggt tccttggtgg cgccaccact ggactcttcg ccgagcccat 
002881 cctatgcagt ctcttcctat ctatcccaga ttctaaaggt gcattctacg gtggccccgg 
002941 tggatcacag ttcgggaagc agattgctgg cgcactattt gtcactgcct ggaatattgt 
003001 tatcacctcc atcatctgtg tcatcatcag cctaatcctg cccctccgta tagctgatca 
003061 agaactgctt attggagatg atgctgtaca cggtgaggag gcatatgcta tctgggcaga 
003121 gggagagctc aatgacatga cccaccacaa tgagagcaca catagtggtg tctctgtagg 
003181 agtgacacag aatgtttgaa cagtacccac tttattgagg aaaaagaaat ataattgtct 
003241 t

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs  
Acc. No. Clone Name Length
AK252569 FLbaf156f20 1734 view details
/rice/oryzabase