cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK064055     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os01g0159600 ( IRGSP 1.0 )
RAP - Chromosome No. 1
RAP - Location, Length 3,123,351 -  3,124,325  ( - );   975(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 3,123,351 -  3,123,939 ( - );   589 (bp)
Exon 2 Location 3,124,052 -  3,124,325 ( - );   274 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os01g0159600 Os01t0159600-01 107089 001125F04 12676 LOC_Os01g06630.1 AK064055 34915 AP008207.2 255672756 BAF04000.1 113531617 NC_008394.4 297598437 NM_001048621.2 297596143 NP_001042086.1 115434656


Chromosome: 1 ,  position: 3,123,351 - 3,124,325 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 atcgatccat cgctagctta tctcaatctc gccacgagga aataaagcct agcgcatatt 
000061 agccgttggt tggtttagta tacgtacgta gggtagctta gcttagagca cgtacgtacg 
000121 catcgatggc gcagcaggcg gagaaggcgg cggagctgca ggacccggag atccgggcgg 
000181 agctggaccg gcgcgcccgc gacgacggca agaccgtcat caagagcggc accggcggca 
000241 agagcctcga cgcccaggag cgcctcgccg aaggcccgtg tcctttttat gtttcttctc 
000301 tcttttgtgc tatatctttt acacgttctg atcgatttga tgtgtacgta cgtttatatt 
000361 ggcgtaatag tgtatacgtg tgcagggcgt aagaagggag ggctgagccg cacgacggag 
000421 tccggcaagg agcgcgccga cgacgacacc ggcgccgtgc tcatcgagcc cgacgacaag 
000481 atgctcaagg aggccaaaaa gaacctgggc cgcaagtgag acgtacgtgc actagcgtgc 
000541 tggtgtgttg tggttgctcg atcatatagt agtgtactag tgtgtgcatt tccttggtgt 
000601 atccatgtgc atgcatgcat ggcaggcgta cgtattagta ttactctacg tgacgtgtaa 
000661 gctatgctgg ctacaaaatt ttggtccctg caggattata ttgtagccat atgtatgtta 
000721 gtatgtatgt acgtgttctt cacgtactgc cctagctact agcaagtcga tctagctata 
000781 tcgtgtgtgt gtacgtatat tgtgatcgat gtacgaagct gctgctttct acatcctggc 
000841 tacaaatgta attgtgtttg tgtgtctccg tacgctacgt ttctgtgtgt ctgtagccat 
000901 gcattgtcct cttcaaggct ccaatgttat ataacaataa gtggttgatt tctactgatg 
000961 aaagcttagt ttatc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ540079 rwhem12j13 548
more... (Total Hit Count: 3 )
/rice/oryzabase