cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK107204     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os02g0620600 ( IRGSP 1.0 )
RAP - Chromosome No. 2
RAP - Location, Length 25,517,881 -  25,519,733  ( + ) ;   1,853(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 25,517,881 -  25,519,733 ( + ) ;   1,853 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os02g0620600 Os02t0620600-01 002125B07 110055 002125B07 11723 LOC_Os02g40730.1 AK107204 38290 AP008208.2 255670529 BAF09370.1 113536987 NC_008395.2 297600179 NM_001053991.1 115447352 NP_001047456.1 115447353 Q6K9G1 AMT12_ORYSJ


Chromosome: 2 ,  position: 25,517,881 - 25,519,733 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 acagcccaca cttccattgc tcctcccctc tcctctacag tctgtgttga gcgcgcgtcg 
000061 aggcggcgag gatggcaacg tgcgcggata ccctcggccc gctgctgggc acggcggcgg 
000121 cgaacgcgac ggactacctg tgcaaccagt tcgcggacac gacgtcggcc gtggactcga 
000181 cgtacctgct cttctcggcg tacctcgtgt tcgccatgca gctcggcttc gccatgctct 
000241 gcgccgggtc cgtccgcgcc aagaacacca tgaacatcat gcttaccaac gtgctcgacg 
000301 ccgccgccgg cgcgctcttc tactacctct tcggcttcgc cttcgccttc ggggcgccgt 
000361 ccaacggctt catcgggaag cacttcttcg gcctcaagca ggtcccacag gtcggcttcg 
000421 actacagctt cttcctcttc cagtgggcct tcgccatcgc cgccgcgggc atcacgtccg 
000481 gctccatcgc cgagcggacc cagttcgtgg cgtacctcat ctactccgcc ttcctcaccg 
000541 gcttcgtcta cccggtggtg tcccactgga tctggtccgc cgacgggtgg gcctcggctt 
000601 cccggacgtc ggggtcgctg ctcttcgggt ccggcgtcat cgacttcgcc gggtcagggg 
000661 ttgtccacat ggtgggcggc gtggccggac tctggggcgc cctcatcgag ggcccccgca 
000721 ttgggcggtt cgaccacgcc ggccgctcgg tggcgctgcg cggccacagc gcgtcgctcg 
000781 tcgtgctcgg cagcttcctt ctgtggttcg ggtggtacgg gtttaacccc ggctcgttcc 
000841 tcaccatcct caaatcctac ggcccgcccg gtagcatcca cgggcagtgg tcggcggtgg 
000901 gacgcaccgc cgtgaccacc accctcgccg gcagcacggc ggcgctcacg acgctcttcg 
000961 ggaagaggct ccagacgggg cactggaacg tgatcgacgt ctgcaacggc ctcctcggcg 
001021 gcttcgcggc gatcaccgcc ggttgctccg tcgtcgaccc gtgggccgcg atcatctgcg 
001081 ggttcgtctc ggcgtgggtg ctcatcggcc tcaacgcgct ggcggcgagg ctcaagttcg 
001141 acgacccgct cgaggcggcg cagctgcacg gcgggtgcgg cgcgtggggg gtcatcttca 
001201 cggcgctgtt cgcgcgcaag gagtacgtgg accagatctt cggccagccc gggcgcccgt 
001261 acgggctgtt catgggcggc ggcggccggc tgctcggggc gcacatagtg gtcatcctgg 
001321 tcatcgcggc gtgggtgagc ttcaccatgg cgccgctgtt cctggtgctc aacaagctgg 
001381 gcttgctgcg catctcggcc gaggacgaga tggccggcat ggaccagacg cgccacggcg 
001441 ggttcgcgta cgcgtaccac gacgacgacg cgagcggcaa gccggaccgc agcgtcggcg 
001501 ggttcatgct caagtcggcg cacggcacgc aggtcgccgc cgagatggga ggccatgtct 
001561 agtggaaccg gaggagctga gctagtagta catacatgca gcatcatcga tcgaacgaaa 
001621 tgcatataag cgtttttcaa ggttgatctg atgctgcagg tttcgtgatt gtataatagg 
001681 aagaaaaaga tagtagtatt ttttatctga gatcatctgt ttggaacagg ggatttgact 
001741 aagatttgat ataaatttac acaaaatctt agcaaaaatc cctttatctc aactctcaag 
001801 tagagctttg ctttgtacaa caaagtatca tgtgtgatat aattgtcagg tgg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK248644 FLbaf171b13 1860
more... (Total Hit Count: 6 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ684451 whpc17b12 694
more... (Total Hit Count: 5 )
/rice/oryzabase