Update info.cDNA ( Data source : RAP-DB )
cDNA Detail
jump to Other species ESTs data to homologous Rice cDNA
| General information | |
|---|---|
| RAP - Accession No. | AK063959 Link to RAP-DB ( IRGSP 1.0 ) |
| RAP ID | Os01g0831900 ( IRGSP 1.0 ) |
| RAP - Chromosome No. | 1 |
| RAP - Location, Length | 37,326,775 - 37,328,638 ( - ); 1,864(bp) |
| Exon (Data source : RAP-DB) | ||
|---|---|---|
| Exon 1 | Location | 37,326,775 - 37,327,523 ( - ); 749 (bp) |
| Exon 2 | Location | 37,327,609 - 37,327,894 ( - ); 286 (bp) |
| Exon 3 | Location | 37,327,988 - 37,328,638 ( - ); 651 (bp) |
| Related Rice IDs | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| RAP Locus | RAP ID | RAP Annotated Accession No |
KOME Clone ID |
KOME Clone Name |
KOME Cluster ID |
MSU ID | cDNA Accession No |
RiceXPro FeatureNum |
UniProt Accession No |
UniProt Entry Name |
| Os01g0831900 | Os01t0831900-02 | 001123G04 | 106979 | 001123G04 | 596 | LOC_Os01g61550.1 | AK063959 | 23485 | Q8S230 | AMT22_ORYSJ |
Chromosome: 1 , position: 37,326,775 - 37,328,638 bp |
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| Sequence (Data source : RAP-DB) | |
|---|---|
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Nucleotide
Fasta Format |
000001 atggcgtcgc cgccgcagcc cgggccgtac atgccggacc tgccggcggt gccggcgtgg 000061 ctgaacaagg gcgacaccgc gtggcagctg gtggcggcga cgttcgtcgg catccagtcg 000121 atgcctgggc tggtggtgat ctacggcagc atcgtgaaga agaagtgggc cgtcaactcc 000181 gccttcatgg cgctgtacgc ctacgcgtcc acgcttatcg tgtgggtgct cgtcggcttc 000241 cgcatggcgt tcggcgaccg gctgctcccg ttctgggcca aggccgggcc ggcgctgacg 000301 caggacttcc tggtgcaacg cgcggtgttc ccggcgacgg cgcactacgg cagcgacggc 000361 acgctcgaga cgccgcgcac cgagccgttc tacgcggagg cggcgctggt gctgttcgag 000421 ttcgagttcg cggccatcac gctggtgctg ctcgccgggt cgctcctggg gcggatgaac 000481 atcaaggcgt ggatggcgtt caccccgctc tggctcctct tctcctacac cgtcggcgcg 000541 ttcagcctct ggggcggcgg cttcctctac cagtggggcg tcatcgacta ctccggcgga 000601 tacgtcatcc acctctcctc cggcgtcgcc ggcttcaccg ccgcctactg ggtaaacaca 000661 cgtgcaaccg tgcattgcat gcatcgtgtt cgactgtttg ttgcactatt cacacgcctc 000721 catgttacaa cgtgactctg acaggtgggc ccgaggctga agagcgacag ggagcggttc 000781 tcgccgaaca acatcctgct catgatcgcc ggcggcgggc tgctgtggtt gggctgggcc 000841 gggttcaacg gcggcgcgcc gtacgccccc aacgtcaccg ccacggtcgc cgtgctcaac 000901 accaacgtca gcgccgcgac gagcctcctc acctggacct gcctcgacgt catcttcttc 000961 ggcaagccct ccgtcatcgg cgccgtgcag ggtatgatga cggggctcgt ctgcatcacg 001021 cccggcgccg gtaacaaatc tttcgtccga tcaaaaccac agcacacaca cagttcatgg 001081 gtccaaatcc tcacgtacgt tttgcatgga cgcagggctg gtgcacacgt ggtcagcgat 001141 gctgatgggc atgttcgccg gcagcgtccc gtggttcacg atgatgatcc tgcacaagaa 001201 atccaccttc ctcatgaagg tcgacgacac cctcgccgtc ttccacaccc acgccgtcgc 001261 cggcatcctg ggcggcgtcc tcacgggcct cctcgccacg ccggagctct gcgctctcga 001321 ttgcccgatc ccgaacatgc gcggcgtctt ctacggcagc ggcatcggcc agctcgggaa 001381 gcagctcggc ggcgcgctgt tcgtcaccgt ctggaacctc atcgtcacca gcgccattct 001441 cctctgcatc ggcctcttca tcccgctccg catgtccgac gaccagctca tgatcggcga 001501 cgacgcggcg cacggggagg aggcctacgc tctgtggggg gacggtgaga agttcgacgt 001561 gacgcggccg gagacgacga ggacgggagg tgcaggcggc gcgggcaggg aggacaccat 001621 ggagcagagg ctgaccaaca tgggagccag gggtgtcacc attcagttgt agaagacggg 001681 aagggtgtgc ttgctcgttc cagtgattct gatgatgtat ggcactgatg tatgttactt 001741 tcaacgttta gtgttaattc ggtgatgtaa tgctggtgta gtttctgtta ttgttaactg 001801 aattagttca tcgaaaacat gagaattatc tggttaacaa aaagtttatg aggtgaactt 001861 acgt |
Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.
| Hit Barley ESTs | |||
|---|---|---|---|
| Acc. No. | Clone Name | Length | |
| AK252569 | FLbaf156f20 | 1734 | view details |
