cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK105236     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os02g0188000 ( IRGSP 1.0 )
RAP - Chromosome No. 2
RAP - Location, Length 4,888,508 -  4,890,269  ( - );   1,762(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 4,888,508 -  4,888,772 ( - );   265 (bp)
Exon 2 Location 4,888,920 -  4,890,269 ( - );   1,350 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os02g0188000 Os02t0188000-01 001113A01 108084 001113A01 15706 LOC_Os02g09510.1 AK105236 31539 AP008208.2 255670529 BAF08047.1 113535664 NC_008395.2 297600179 NM_001052668.1 115444706 NP_001046133.1 115444707


Chromosome: 2 ,  position: 4,888,508 - 4,890,269 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 acagtatcaa agaccaaagc tatcgagaga tcgatcactg cacgccagct gctcggagaa 
000061 aaggcgagaa gaaaatagtg agctcgcagc tagctaagtt agcttgctta gccatgggcg 
000121 aggaagccgc ggcggccacg gtgacggcgg cggcggcggc ggcggcgagc ggcggcgcgc 
000181 cgcacctgct cctcatctgc ttccccgggc agggccacgt caacccgatg ctccggctcg 
000241 ccaagcgcat cgcggcgaag ggcctcgtcg tgacgttctc gtcgacgtcc gccatcggcg 
000301 ccaagctcgt ggagtcgtcc ggcgtgtcgg tcggcggcga cggcgtgccg ctcggcggcg 
000361 gccggatcag gttcgagttc ttggaggatg gcttcgacgg gagcgacctc gacgagctga 
000421 tgcggcacct cgggacggcc gggccggcgg cgttcgccga gctgctcgcg cggcaggagg 
000481 cggcggggcg gccggtggcg tgcgtcgtcg ggaacccgtt catcccgtgg gcggtcgacg 
000541 tcgccgccgc cgccggcatc ctgtcggccg tgctgtgggt gcagtcgtgc gccgtgttct 
000601 cgctctacta ccaccgcgtc cacggcctcg tcgagttccc ccccgaggac gacctcgacg 
000661 cgcggctcac gctgccgggg ctcccggcga tgtcggtcgc cgacgtgccg tccttcctcc 
000721 tcccgtcgaa cccctacatg agcctcacgg aggcgataca gcagcagatc cgcaccatcg 
000781 acaaggcgac gtgggtgttc gtcaactcct tcaccgagct ggagcgcgac gtggtggacg 
000841 cgctccgcgg cgtcgcgacg tcgccgccgc cgccgccgct catccccgtc ggcccgctga 
000901 tcgagctgga gggcgacgcc gcggtgcgcg gcgacatgat cagggcagcg gacgactgcg 
000961 tcgggtggct ggacgaacac cctccgcgct ccgtcgtgta cgcgtcgctc ggcagcgtcg 
001021 tggtgctgtc cgccggcgag gtggcggaga tggcgcacgg gctcgcctcc accggccggc 
001081 cgttcctctg ggtggtgcgg ccggacagcc gcgcgctgct gccggagggg ttcctcgacg 
001141 ccgtcgccgg ccgcggcatg gtggtgccat ggagccccca ggagcaagtg ctcgtccacc 
001201 ccgccgtggc gtgcttcctc acgcactgcg gctggaactc gacgctggag acggtcgccg 
001261 ccggcgtgcc ggtggtggcg ttcccgcagt ggggggacca gtgcaccgac gccatgttcc 
001321 tcgtcgacga gctcgggatg ggcgtccgcc tccgcgcgcc gctgcggcgc ggcgccgtgc 
001381 gcgacgccgt cgacgccgcc gtggcggggc ccgacgccgg cgcgatgcgg tccagcgccg 
001441 cagcgtggag cgccgccgcg cgggcggccg tggcggccgg cggctcgtcg gaccgccacg 
001501 tggaggcgtt cgtggaggag gtgaaggcgc gagcggctaa ggcgtgacgt cacgcatgga 
001561 atcataaatc gcagcgttta gttattaagt aagcggcagg gacagattta attaattgct 
001621 acttcgtaca agtattttgc caccggtttg attttaccca agcgtcgtgg taaataaaaa 
001681 tagtggcgct gtcattttcg tcaaaatttt gtttgatttg tgtagctgtt ttggcaaaat 
001741 aaaatttaac gtatacggac ac

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK248767 FLbaf5i21 1823
more... (Total Hit Count: 2 )
/rice/oryzabase