cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK105011     Link to RAP-DB ( IRGSP 1.0 / Build5 )
RAP ID Os02g0187800 ( IRGSP 1.0 / Build5 )
RAP - Chromosome No. 2
RAP - Location, Length 4870165 -  4874035  ( - );   3871(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 4870165 -  4870975 ( - );   811 (bp)
Exon 2 Location 4872018 -  4872245 ( - );   228 (bp)
Exon 3 Location 4872874 -  4872987 ( - );   114 (bp)
Exon 4 Location 4873813 -  4874035 ( - );   223 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
Tigr ID cDNA
Accession No
RiceXPro
FeatureNum
UniProt
Accession No
UniProt Entry
Name
Os02g0187800 Os02t0187800-01 107859 001007H09 6830 LOC_Os02g09490.1 AK105011 15991 Q6ZHS4 CADH2_ORYSJ


Chromosome: 2 ,  position: 4,870,165 - 4,874,035 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 agaattcagc gagagagagc gaatcagcca ctgcacttct tgttcttgtt ctcttcctcc 
000061 tcccgaatcc gatccatcca ttggccgccg ccgccgccgc cgcctcgtgc gtcgcgtgtt 
000121 cgtgtccaga gacgatgggc agcctcgccg ccgagaagac cgtcaccggg tgggccgcca 
000181 gggacgcctc cggccacctc accccctaca actacaccct caggtatgat atgatatgat 
000241 cgatcaccct ctccttctcg atcttgttct tgcaagtttt gcttaaggtc ggtagaaacg 
000301 gagggattag gttttagttt ctcttttgtc tcaattctga aactctggta catgcgttct 
000361 actacagttt agttgttcag atggttcgtt tctgaatttc tgaaaactga tggcgttcca 
000421 gtgctttagt tgtttagatg cccccgtgtt ttaatttgtt tgtgttcatg tcatctgcct 
000481 cgagtacaac tcagattgtt tctgcctctt ggccaaagtg tgaagaggtg aagagagcaa 
000541 ttggatttct tttttctttt ttgggctcct ccattcgatc cattccacac ttcccacgtg 
000601 agtttgactc tattttgtat tcctgctcct ctcctagtat aagtccaaca tgaagagtat 
000661 agtggtgtag tactagtgta ctaccaaaac tgcttcacct accgccaatt ggctattgca 
000721 atcatcgtca cgtcttggtt ttgttgggtg aaaggaacag aatccctgaa tccggagcag 
000781 ttgtggcaaa cagacagaat gcatggagtt ctttttggct agttgcctgg ctccacatat 
000841 atatattttc agaagcattc tttataattt tctaatatat atatttgcta tgcaattctc 
000901 gtgccatgcc tccttaaaga aaaggaggat tatatatata tcaataattt ccttgagttg 
000961 tcttcttgta gaatggaata actgaagaag catcttatgc aacagatcaa ctaatgttct 
001021 ttttttttcc tgtatgtggt ggtaccagga agactgggcc tgaagatgtg gtggtgaagg 
001081 ttttgtattg tggtatctgc catactgaca tccaccaggc caagaaccac cttggtgctt 
001141 ccaagtaccc catggtccct gggtaagatt attcacagtt atctagatgg atcatggctc 
001201 atgtcaatgg agatcttcta ctagcaattg atttgatggt gtattctata gtagactgaa 
001261 gataaactta ttaactgatt gggataacaa acatatcaga aaagagtagg cactagtaac 
001321 tagcaaatct ggtcagtgct tttttcagat ttacaaaagg catagatgca catgcaccac 
001381 tatatcacac tcctttggaa cagaaagata agttagtgca tcgcttttag catttttctt 
001441 ttttgatcaa cacctttcat gacaggtata gtacagatta gatgcaccat cagtttcaga 
001501 gacacgtgta aagaaaacct cagcgagaac cttccctgat ctgatgggct ttaaataagc 
001561 acacgataga tccccaacac caggctgaaa aatgatgcct aattagtagt aatttagtac 
001621 tactacacca tctgcatgtc gtactaagta tgcaacaata attggttgga ttaattagtt 
001681 ggtgaccaag aattcctttt tccagtacac ttccattgtc gtaccaatat tcagtcatgt 
001741 gttggatttt gtcggtgacc aagaaaattc tctcctcttc tcgtctgcag ccatgaggtg 
001801 gtcggcgagg tggtggaggt cgggccggag gtgaccaagt acagcgccgg cgacgtcgtc 
001861 ggcgtcggcg tcatcgtcgg ctgctgccgc gagtgccatc cgtgcaaggc caatgtggag 
001921 cagtactgca acaagaggat ttggtcctac aacgacgtct acaccgacgg ccggccaacc 
001981 cagggcggct tcgcctccgc catggtcgtc gaccagaagt gagtgctaaa cacagcttta 
002041 ctccaacaag taatcaccaa ccaactgatc acgatatcat tatcatatta tcatattgtc 
002101 agtgttctag gtagagaaaa ctagactgga cttttccgaa catccaaagt aaagtccagt 
002161 ctgttagaaa attttgtgga gaaaatgtca tctgagactg aaagagatgt cgagaagtcg 
002221 gtactgtgtt gagtgtaaag tgagaagtca ccaaagttag gtataaagtg ttgattaact 
002281 gataagtcct cacctacccc ggtccattag tccatttgtt gttggaagaa ttgcttcttg 
002341 aacagagcaa aagttggatt gttgcatagc gtcgttgtag tcagttggta aactagcaga 
002401 gacagtgaaa tgttgggctc attttgtttg gtgcgctacc aaatcattgg tagcgtcaaa 
002461 tcatggtcaa gatttggcac taccaatatt ttagtatagt tggtttataa gagcaagttc 
002521 aatagtaaag ttaactgccg gctccaaaat tcaccacatt atttaagaga taactaaaca 
002581 atggtagata cagtaattgg ctacacccat gctttaacca aggcatcctg tcaggtgttg 
002641 gtaacttctg catgttcaag ttctaatttt cgattggttg tcccgagctg cagggggcca 
002701 gagcgcctag gcgctcgtgc ttgagccggt gactggattg tcgtccgctt tgctctctct 
002761 gctttccctc tctctatcat atatgttaaa atattaggta agcaggctat tagcctgcta 
002821 ttgtacctgc tctaagagtt gtattacctt tggtaaattt tgacatcatt acaaacatat 
002881 acatggtact atttaaagtg ccaactattt gatagggcaa attctggcat caaaccaaaa 
002941 catcccgtga tttttgatcc acctgcctaa tctgaaagtt gtcacgtctt aaaaagatta 
003001 aaatatttgg ttagtgagat ggtaagaaac tagtaaaaaa agtaatgaat ttgtgtgcag 
003061 gtttgtggtg aagatcccgg cggggctagc gccggagcag gcggcgccgc tgctgtgcgc 
003121 cgggctgacg gtgtacagcc cactgaagca cttcgggctg atgtcgccag gtctccgcgg 
003181 cggcgtcctg gggctcggcg gcgtggggca catgggcgtg aaggtggcca agtcgatggg 
003241 gcaccacgtg acggtgatca gctcgtcggc gaggaagcgc ggcgaggcca tggacgacct 
003301 gggcgccgac gcctacctcg tcagctccga cgcggcggcg atggcggccg ccggcgactc 
003361 gctggactac atcatcgaca ccgtgccggt gcaccacccg ctggagccgt acctggcgct 
003421 gctgaagctg gacgggaagc tgatcctgat gggggtgatc aaccagccgc tgagcttcat 
003481 ctcgcccatg gtgatgctcg gccggaaggc catcaccggc agcttcatcg ggagcatggc 
003541 cgagacggag gaggtgctca acttctgcgt cgacaagggg ctcacctccc agatcgaggt 
003601 cgtcaagatg gactacgtca accaggccct cgagcgcctc gagcgcaacg acgtccgcta 
003661 ccgcttcgtc gtcgacgtcg ccggcagcaa catcgacgac gccgacgcgc cgcccgcctg 
003721 atcgccgccg tgcaccctca tggcagcatc cgtatgatcc gttcttgaac ttgtttgtgt 
003781 gagactctga cgacttgtcc atgtaacgtc cgtgtgcctt tccggtataa attcggcctc 
003841 gcaatatatg gaccattttg catttccgat c

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK248843 FLbaf3i06 1417
more... (Total Hit Count: 36 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ914350 whthkles29i22 693
more... (Total Hit Count: 41 )
/rice/oryzabase