cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK063826     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os01g0658400 ( IRGSP 1.0 )
RAP - Chromosome No. 1
RAP - Location, Length 28,510,794 -  28,514,034  ( - );   3,241(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 28,510,794 -  28,511,142 ( - );   349 (bp)
Exon 2 Location 28,511,252 -  28,511,356 ( - );   105 (bp)
Exon 3 Location 28,512,084 -  28,512,211 ( - );   128 (bp)
Exon 4 Location 28,513,755 -  28,513,852 ( - );   98 (bp)
Exon 5 Location 28,513,948 -  28,514,034 ( - );   87 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os01g0658400 Os01t0658400-01 106841 001122A09 10846 LOC_Os01g46926.1 AK063826 44313 AP008207.2 255672756 BAF05677.1 113533294 NC_008394.4 297598437 NM_001050298.1 115438966 NP_001043763.1 115438967 Q8S920 UBC5A_ORYSJ
Os01g0658400 Os01t0658400-01 106841 001122A09 10846 LOC_Os01g46926.2 AK063826 44313 AP008207.2 255672756 BAF05677.1 113533294 NC_008394.4 297598437 NM_001050298.1 115438966 NP_001043763.1 115438967 Q8S920 UBC5A_ORYSJ


Chromosome: 1 ,  position: 28,510,794 - 28,514,034 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 tcccccaact ccattattga ttcttgcaag gaggaagagc agctagaggc gaggcaagaa 
000061 aagaagtgaa atctctccgt tagacaggtt tgttttcctg cgagtgctct ctaatttgca 
000121 ctgattaagc tttgatgatg cttgatttgt ggtttgattg ttcttcttgt tgttggagat 
000181 aggaagagga aaagcaaggg ggaattgggg atggcgtcaa agaggataca gaaggagctc 
000241 aaggatctgc agaaggatcc ccctacatca tgcagtgcag gtcttgcttt ctttcttttg 
000301 cttgcttctt ttgggcgtgg attttgcagt tctaggccat acatcttgca caggagtcag 
000361 atttttgtac atgtgcttct gaatgacttc tttgtccacg tgcttgctgc tttgccgtag 
000421 aatagcaatg gaaaattgct ctccaatttg tcatatacat caaaggggct tagcttagca 
000481 gtatctggag taactctctg tactcagctt tgccccagca aaagagggga aagacagatc 
000541 actgtatgat tagagttttc atcttatgaa gattacggat ggaggtttta tatatatatc 
000601 gattaagatt aatacggcag agtttgtctg aacgtactca tgcagggatt agtttatgct 
000661 attatgattg acagggatac tatatttgcc ctgatgaatt ctggtagaat tacttccctt 
000721 tccatggcgg atataggctg gtgttgttgt tattgttgtg atttagtcta ctttacaaac 
000781 taaatctcac catccaagta tgctcaagaa gtgtcaatta actgagctga atattgcata 
000841 tagggtgctg tgcgatttgt attctgaaat gtaaatgtta cctgtcaagt gctttgtcaa 
000901 aggagttgct ggtgtggtac tataaatacc atgagtatca aatcggacta ttccttctaa 
000961 tttagctcat catttactaa tatagcataa aacaatggaa atgtagttca gtatagaaaa 
001021 gtgattagct tgccttattc gagagaaaac tagttggttg tctagttgtt attcttcatc 
001081 tttgtttcca atgatccagg agaactttta taccaaaaca actgcatcca tgctgcatct 
001141 ttgtttctag aacccaggat ctgtcagacc tgtcatcctg tccattggtc agttcatatg 
001201 cttttatctt ttgtagtggt tctactagtt tttaaaattt atagcagggc ccaaaatatt 
001261 caatagaata aacttaattt gttagactac ttgtatgaac tttcttcgcc ttatggacag 
001321 gtggccttca ctcttgcact ttaaacttcg ttcaactagt tggatcgcat gtgccatggc 
001381 ggccacgctt acacattgga aacataagta ctatttagtg tggctagaat aagtttggtc 
001441 ctttgagctt ggagctcacc ctgtccatac ctgtaagaag tgacaatttc atgttgtcta 
001501 gttgtatacc attaagcgaa aatggtaaca tactgttatt ttgtcaaagg aatgtcttcc 
001561 aattttcctt ggggtcaaga aaaaccaacc tgagcttaac tgtgcacata acaatggata 
001621 cttgtctttt gtccttcagc ctacttctgt tttgtttgac cctgtttcaa tacccttatt 
001681 tatcatgcaa tttcatctct aatcaaagct gtagagctag accatatgcc cataatatga 
001741 tatggttatc aggcaatgga tagtagccta ggactgcacc tagccacatt tcttaacagt 
001801 gatgatttat tactatttga caggtcctgt tggtgaagac atgttccact ggcaggcaac 
001861 gataatgggt ccatctgata gcccatatgc tggtggagtt ttcctagtta ccatccactt 
001921 ccctcctgat tatcccttca aaccacccaa ggtacttggc agtgacttat cactcccttt 
001981 ttatctgtcc actattccta gtcatatata tcttcttact gctgttttgt aaaactgtaa 
002041 ccctattcct ctgctcattt cacatataaa aatagaactc tggcagatgc tataatttgt 
002101 ggttgattga attggtgctt tattcatatt ttttattcta ttctaaagca ttcaagggat 
002161 tgagaacgtg gtataaatta taaagttcat gctgaagttg tgcacaagag caactggtgg 
002221 catgtcatgc cagtaactaa cttgttgaaa acatacaggt ttagacttta gaatgaactt 
002281 aaaatcaaag ccacttatga acctgattct tgaagatcaa attttgggaa atcaaggtgg 
002341 ataaatattg caagttacgg ctgtagtcat gcaaaagtga aagcatagct gctgtctaat 
002401 aatgctaatt cagttatgtt gccagtgttc tcgaatcttt gtagtatata acaaagttgt 
002461 ttcctggact gtgctatata accgaataat ggtttggtag tgattgtctt ctcacttatc 
002521 actaaggtgt tcttttactt cattctgaaa gaatatcact tcaattataa attcttatgg 
002581 tttctggttt tcagtctgaa tatccattaa gttctatagc tttacaacag caccgagact 
002641 gactgaagaa tgtgacgtct atgatatgca atatgcaggt ggcgtttcgc accaaggttt 
002701 tccatccaaa catcaacagc aacgggagca tttgccttga catccttaag gaccaatgga 
002761 gcccagcact aaccatttcc aaggtttcct ttctcgctta acgctatttt ccttttgcga 
002821 ggcggttgct tggtctctcg cagttgggct gaacgaatcc cgcaaaaaca tgtgctctct 
002881 gcttgctttc aggtgttgct gtcaatctgt tccctgctga ctgatccgaa ccctgatgat 
002941 cctctggtcc ctgagatcgc ccacatgtac aagacagata ggcacaagta cgagaacaca 
003001 gcaaggacct ggactcagag gtacgccatg tagcacctca gatatcgatg gacatgtcga 
003061 tgttgtaaca acattatcaa cgggtgtgtc tccctctcgc cttgtgtggt gtaaggatca 
003121 aaaccggctt tgcagtgcac tcttggtgtt gctccattgt gtcactcact cattgcagtg 
003181 atttcgaata gtatcaaact ggtggttttt ttcggtcaga taatgtttgc aacttgccaa 
003241 c

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BJ454573 baak24o20 704
more... (Total Hit Count: 166 )
Hit Wheat ESTs
Acc. No. Clone Name Length
BJ207209 wh2k20 620
more... (Total Hit Count: 977 )
/rice/oryzabase