cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK103704     Link to RAP-DB ( IRGSP 1.0 / Build5 )
RAP ID Os02g0120100 ( IRGSP 1.0 / Build5 )
RAP - Chromosome No. 2
RAP - Location, Length 1,050,786 -  1,056,830  ( - );   6,045(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 1,050,786 -  1,051,192 ( - );   407 (bp)
Exon 2 Location 1,051,378 -  1,051,512 ( - );   135 (bp)
Exon 3 Location 1,052,343 -  1,052,396 ( - );   54 (bp)
Exon 4 Location 1,052,501 -  1,052,581 ( - );   81 (bp)
Exon 5 Location 1,052,667 -  1,052,761 ( - );   95 (bp)
Exon 6 Location 1,052,877 -  1,053,053 ( - );   177 (bp)
Exon 7 Location 1,053,139 -  1,053,212 ( - );   74 (bp)
Exon 8 Location 1,053,346 -  1,053,453 ( - );   108 (bp)
Exon 9 Location 1,053,543 -  1,053,718 ( - );   176 (bp)
Exon 10 Location 1,053,952 -  1,054,002 ( - );   51 (bp)
Exon 11 Location 1,054,154 -  1,054,264 ( - );   111 (bp)
Exon 12 Location 1,054,493 -  1,054,547 ( - );   55 (bp)
Exon 13 Location 1,055,667 -  1,055,789 ( - );   123 (bp)
Exon 14 Location 1,055,922 -  1,056,007 ( - );   86 (bp)
Exon 15 Location 1,056,235 -  1,056,349 ( - );   115 (bp)
Exon 16 Location 1,056,429 -  1,056,830 ( - );   402 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No
KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
Tigr ID cDNA
Accession No
RiceXPro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
Os02g0120100 Os02t0120100-01 J033136N12 214559 J033136N12 8485 LOC_Os02g02780.1 AK103704 29806 AP008208.2 255670529 BAF07620.1 113535237 NC_008395.2 297600179 NM_001052241.1 115443852 NP_001045706.1 115443853


Chromosome: 2 ,  position: 1,050,786 - 1,056,830 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 gtttgtgtct ataaagttgt ggactttctc gccgccattg tcacgtctca cgtgcgcgcc 
000061 accaccaccc catgcagacc cagcagcagt agcggcacgg ctctcctctc tcgtctcgtg 
000121 caccacgccg ccgcgcgcgc tcgctttgct tcgagagtaa tcgatggccg tggaggagtc 
000181 gccgccgccg ccgccgtcgt ccccgccgcc gccgccgtcg tccccgcagc cagcggcgga 
000241 ggtcggcgcg gggggacggc gcgcggacaa gagcgggcgc cgcctcgagg tgtacagcga 
000301 ggtactcgcc cgcctccggg gcctcggcgc cgccgccccc gtcgagatct cgccggccta 
000361 cgaggacgcg ctctgggccc acttccaccg cctccccgcc cggtgagatc tcttctcctg 
000421 ccctctctct ccccctccct ccccctcccc gacttccctc atggccatgg cgggcgtgca 
000481 ggtacgcgct ggatgtgcac gcggataggg cggaggacgt ggtgacgcac caccggttgc 
000541 tggaggaggc gcgcgatccg gaccggcggc ccgccttgtc ggtgcgcgtc gtccaggtga 
000601 gagagatcca tccatggctg cctgcatgtc ggtcgatttc gcgtactgct taatttccat 
000661 tagattttta tttctctcct gtggtgttgc tcggggaatt tgatttgtgc tgtctcatgt 
000721 tgttcattag atcaaactga agagtagagc ttagatgttg catcaaactg aagagacatt 
000781 ttaattcctt ggcttaccaa actttgtttt ctgcttgatc taggtttcta ggattcttga 
000841 tggtgatatg gatgattgtt ctgagcttgg gatggagccg gttcatacca accacttggc 
000901 aagacaaatg tatgcatgat ctatctatct atctatctat atgcacatga agttcgttta 
000961 ctttcatgca tgtgtctcct tggctgttct tgtcttttat gcacgctaat ggagtaatgg 
001021 tgactacaca aatcgtttca gggttcatcc ccctcctgcc tttggttctt gctccaactt 
001081 agaggcactt gcgctcgagg cgagtgaggc taatctaagg agcagtaaca atgatgaaga 
001141 tagcagtgtt catctcattt ccaggtagat aattcccctt ttcagttcac gtgtacctcg 
001201 ctttattttg agtttagggc ccctttgatt tgaatgaaaa acataggatt tttgtaagat 
001261 tcaaatccta taggtttttt ttcctatctg gccctttgaa acaaatgatt gaaaactgtt 
001321 gaatcctatg aaattcttaa ggaatgctct attccataca agttttggag gatttttaac 
001381 atgaggtcca acctcatgga aagttttcta tgagtctatc tctctcattc aatttttgaa 
001441 tttttcctgt gttttacaat cctctatttt gcgtttgaat tcctatcgaa attctgtgtt 
001501 tttcctattc ctttgttttc tcaatcccgt gtttcagagg agcccactgt atttgtcttt 
001561 ggttcttttg gttcatgtgc cattctgtac aatcatagcg tgcttagcac tagcttgtag 
001621 tcttgtacta ctaccttaca aggttggcat gtcggcatgt tgcgattccc ttttaaaaac 
001681 tgtttttgat acttctctat atcaattaat taacatggta tattgtgtta caaccagaaa 
001741 atcgcatatt ttaccttgtg aagaatgcat gcctctgtgg cctatttttt aacaaatgat 
001801 agcatcagtg gattagttgt tactaacagt tagctgcaaa accatgatat gcagaatttc 
001861 ctttccgaat atggtacttt ctctggcaat attgcatttg catacttgtt tagatgtaca 
001921 agacatttca caaaaagccg atgccacgca tgagcttctt tgttatgcgc tggtttgatc 
001981 atgtagtgag tggattatga aattgtcaaa agtactcata attggtggga gtagttcatt 
002041 tttccaactt aagcctttat tccctccgtt tcacaatgta agtcattcta gtatttccca 
002101 cattcatatt gatgttaatg aatctagaca tgatgtggga aatgctagaa tgacttacat 
002161 tgtgaaacgg aggaagtatt tatgggcatt ttcattagga ttatgcaaat agttgattaa 
002221 tacttggatt ctatatattc tcattctagt tgattaattc tcgctatatt ctgaatcttg 
002281 caggccaatg catgagataa cttttgcaac aactgataag ccaaaggtcc ttagtcaggt 
002341 aggcatactt ctttcaatac aatcttaaca aagcgaagga aattcaaaag ctgacaagta 
002401 gctagttagg aaaatcatta gtaaaaataa atggacatat ttatttagaa aaaaagatta 
002461 aaaaaacatt acaaatctgt ttaatgtgaa cttcaaggca attttataca ggacttatgt 
002521 cagcaattgt tttgattctt acactttgcc tttcatacac ttgcagctga cttgcttgct 
002581 tagtgagctt ggtcttgaca tccaagaagc gcatgcattt tcaacaagtg atggttactc 
002641 attggatgta tttgttgtca ctggttggca ccttggggta cgcacccagc ataatagtgt 
002701 tactgtgtta gtttgtcttg tccttattgc aattggtctt tagagctaaa cgcttcagta 
002761 gttcagttag ttcagtaaca tacttcactt ttcgtgttga taatttgctc ttttgatgca 
002821 cactgcaggg tactgagcag ctaaaagaaa agttgctgga gaagtttcat gacattgagg 
002881 tataagcttc ccctcacttt cttctatgaa gttcaacgaa aaaaaaaact cattctcgtg 
002941 gtattaattg ttgcctgaaa atatggtacc tggacctgaa aaaggaatgc agaacattat 
003001 tttcctaacc agtacttgcc ttgttcattg cactcataaa aatcttgtaa ggtctattga 
003061 attcctcaga taaaaaacat ttgttttagt tttattttgg tttcgtgtac agacacaagc 
003121 ttggccaaca tcaaactcat cgtcacaatc attggaaggt ccgtcaggtg gagagagtat 
003181 gccatctacc agtgtggaaa taccaacaga tgggacggat gtttgggaga tagatctcaa 
003241 gcttctcaag tttggaacca aggttgcttc tggatcaaat ggcgatctgt aagttccatt 
003301 atctttgtcg ggaagtgaaa acaatataat tttacacaac tggggattga gtgccatttg 
003361 atgctttgct ttctcaggtt ccgtggatca tactgcagtc aggatgtagc tattaaagta 
003421 gtgagacctg aacgcattag tgcagatatg taccgtgatt ttgcacagga agtctacatt 
003481 atgaggttaa cttaatattt ttttattgct tctcccattt atcgagcatt ttctggtgtt 
003541 tagcatttgg caaatcatat gcatattgac tttattgact gtaccaaatt gtttcttaca 
003601 aaatctacat gcttgcagaa aggtccgcca tagaaatgtt gtacagttta tcggtgcctg 
003661 tacaagacag cccaacttat atattgtaac aggtatatta caacggttta acttataatc 
003721 tttgtagaca aacttctgta gtgtttgaca cactctaatt tgcattcatt ttcttagatt 
003781 tcatgtcagg aggtagtctg catgattacc ttcataaaaa gaacaattct ttcaagctat 
003841 ccgaaatact gagagtggcg acagatatct ctaaaggaat gaactatctg catcagaaca 
003901 acataattca ccgtgatctc aagacagcga atcttcttat ggatgaaaac aaggctagtt 
003961 ttttctcatc cataatctca tccataatgc tatatgattt acagagtgtg cagagtgata 
004021 tttgctcctg tcattgaact tctaaatgag agcgatcata tttttcaggt cgtaaaggtt 
004081 gcagattttg gtgttgcacg tgtcaaagat caatccggag tgatgactgc agagactgga 
004141 acttatcgtt ggatggcacc tgaggtgcct gttatacata cgctcattcc ataagaataa 
004201 caacagcatt tttgtttatt ctaacatttg tattctattg taactacagg tcattgaaca 
004261 taagccctat gatcataaag cagatgtttt tagctttggt attgttctat gggagctgct 
004321 aactggcaag gtaactacaa attgctccag gaaaaagtca atttctttct ttctttttcc 
004381 aacttatatt aattacatat aaaactaaac tcacctaact attcaatttc tcagataccc 
004441 tatgagtacc taacaccact acaagcagcc ataggtgttg ttcagaaggt aagcaagcat 
004501 ccctgcttaa attctgtagt tacatgcgtg gtatccgtag tatttagctc aaaaatttaa 
004561 aatgttgatg aaacccattg tatagctatg tcctgtgggt gctggatttc tttagttcaa 
004621 gtgggggaca tgtgtgatgc tctaaggata cagtagtttc gagaagcagt ctttaaaaaa 
004681 tgatggcatc cttgttcttt caagaaacca ttcttttaat atgcgattgc ctccctttgt 
004741 gtccatccta ctaatcactc acctgattag aggtgcaagt taggttttca ggttaccatg 
004801 ctcatgggaa tgagatgaag tagaacaaac ttccgtcaag tcacgtcatt gtagctccct 
004861 caattgtagg gtcacatata atatctgctt aacatcatag attcttacca ttagcagaaa 
004921 gtgctatgaa ttgcatatga aaatgattat gaaccttgat tgtaaatgaa atagttgccg 
004981 tgattgccaa gtaggagtag tttgaaaaga caagtatttt caagagaata taggtccttt 
005041 agagacactg tacataccta gaaatttcat ggaaatttat tggcatattt atctatatcc 
005101 tcatatacat gcatatatac ggtatacctg cttgatttca taaagtatgg cctttttttt 
005161 ggataaaagg cctaagatag gagattgcct ttggtatcta aaagagttgc aagacagcat 
005221 tttaacttgt acatatgtag cagagagctg ctagttattt acaacaattc tacacaaaat 
005281 taaggttcac tcatgtgtat tttgatcatt ttctgcaggg ccttagacca acaattccga 
005341 aagatacgca ccccaagctg tctgagctgc ttcagaaatg ctggcataga gatcctgctg 
005401 aaaggcctga cttctcccag atactggaga ttcttcagag actccccaaa gaggtcagtt 
005461 ctaatgcacc tcgactcatc aatttatcat gcatttctta aaaattctca agattttgtt 
005521 cttttacaaa aacagaaact atttgctcaa tgaaatttta gtttgtttca tgttcaatat 
005581 catgctccag aaaaatatat attaaatttt gttttaatat cctgatttaa aaaaacaggt 
005641 gagagctgat accgagggtc gccagaaatc aaaggcagga tttctttcag cattgaagag 
005701 aaaccactga aagtagctta tacaatgttg gtgcatcatt caattgtagc atcccacaac 
005761 aagagggaag cgcattgtgg tgtacagtga ttaaaaaaaa agtatttctt acgttgttgc 
005821 agctttgttt tttttgctta tttagttttt ttttcagctt tttggtttct tttgctgttg 
005881 tttttcttgt tctagttttg ttgcattaat gagaacaagt atagaaaaag gaatgtgctg 
005941 aaaagagttg tacaaattga tcctgttttc ttgttcatgt ctgaattccg attttctcct 
006001 cctatgttgt agatgaaaat cttgtagtgt atgcctatat tttcc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BJ447568 baak16f05 627
more... (Total Hit Count: 7 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ622248 rwhvs12n11 881
more... (Total Hit Count: 22 )
/rice/oryzabase