cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK103434     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os02g0116600 ( IRGSP 1.0 )
RAP - Chromosome No. 2
RAP - Location, Length 875,964 -  878,615  ( - );   2,652(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 875,964 -  876,610 ( - );   647 (bp)
Exon 2 Location 876,937 -  877,099 ( - );   163 (bp)
Exon 3 Location 877,222 -  877,302 ( - );   81 (bp)
Exon 4 Location 877,508 -  877,570 ( - );   63 (bp)
Exon 5 Location 878,246 -  878,615 ( - );   370 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os02g0116600 Os02t0116600-01 214286 J033129B02 8354 LOC_Os02g02480.1 AK103434 24218 AP008208.2 255670529 BAF07594.1 113535211 NC_008395.2 297600179 NM_001052215.1 115443800 NP_001045680.1 115443801
Os02g0116600 Os02t0116600-01 214286 J033129B02 8354 LOC_Os02g02480.2 AK103434 24218 AP008208.2 255670529 BAF07594.1 113535211 NC_008395.2 297600179 NM_001052215.1 115443800 NP_001045680.1 115443801
Os02g0116600 Os02t0116600-01 214286 J033129B02 8354 LOC_Os02g02480.3 AK103434 24218 AP008208.2 255670529 BAF07594.1 113535211 NC_008395.2 297600179 NM_001052215.1 115443800 NP_001045680.1 115443801


Chromosome: 2 ,  position: 875,964 - 878,615 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 ccagcatctt cctcagccac caacctattc tcacttttac acccaacccc tccaaaaaag 
000061 tataaaatca caacatcacc cctctccacc acagctaaaa actactaagc gaggactcgt 
000121 tagacattac agttatatcc agggtgcaat ctgcaaaagt ctcatcccca aatccccaat 
000181 tcttccccga cctctcgctc gcggaggagg agcgagaatc cccgaaccct aggcccgatc 
000241 tcccgcaccc gccgcgggcg atggacggag gcggagaccc cgttgacgag ttcctcatcg 
000301 gcggcggcgg cgaggacggc gacctcggcg tcttctgcga cggtgtgccg acgctgccct 
000361 gcgatggagg gtacgcttga tccgcttctg tttctttttg aggagtaaat tgagctcgaa 
000421 ttggggtttg ttgcatgcgt tttgtagtgt ttgctgtcct tgtcgctgca ggtttgttgc 
000481 ttaaaaaaat tgcggtgatg tttgatacta cttaggagta ttttttttct tgagaaaaag 
000541 agggggattt tcacatgtac accgtctagt tggttgattg attgatcgat taggttatag 
000601 tagtatatga acgaagaatt gtgattgcta gctgatttat aggcgggttc agcaaatgct 
000661 gctacagtac ccatcgattg gagggcaaaa accgtaaatt acaatagcgt gtactagtag 
000721 ttctggtgct gttggtacca ttccaatcga gcttattgaa atcaattagc aatttgattg 
000781 cgcccttatt ggaaaagtgg gcgcctgcgt gataaacacc tagttgccaa ctacttgcca 
000841 taggatatgt tacattgttc tttgctctct gaaatatcta cacaagtatg attctgaatg 
000901 taaaatgtta gctttgaagc acttgctaat ggaaatatgt atggcagaat cttttgttgc 
000961 ctacctgagc agctatacct tgcttgaata atttttgttc ccatcaactg ttattcactt 
001021 ggcgcttact ttgtaattat tgcagacttg ggattgatga tgtcagtgga gatacttgtt 
001081 gccttgacca atctgtttta gggaaaaggt ctgtcactag tttctgaatc ttactttctt 
001141 atgattttct aagtatcttt gcttacatac cttgaactgt tactgatagt tataactttt 
001201 caaccattac ggtattacca tgaacaaatt taacacagta tttagacata ttattcattt 
001261 tattgctggg accatatttg attttcattt gtaatggttc tgattttgtg cagaggtaga 
001321 gatgaatcat catcatctgg tccaaagtcc aaagcttgcc gtgagaaaat tcggagggat 
001381 agactgaatg acaggtgtgg gaattaacaa cgtgcctctt cgccatccct ccatgtagaa 
001441 aagatgaatg cactcacaca tgcatacatg attttccaca tatgtctcag ctgtgatcta 
001501 tttttctcaa tcgcaggttc cttgagttat cttccgttat caatcctgac aagcaagcta 
001561 agttggataa agcaaatatc ttgagtgatg cagctcgtct gttggcagaa ctcagaggcg 
001621 aggcagaaaa gcttaaagaa tctaatgaga agctacgaga aacaatcaag gaccttaagg 
001681 tattttgttc tcacaatttt ttaccttcta cccctggatt agaatgcctg atgccctcca 
001741 cagtcatgtc ctgtgtccta aaatgatata tcgcatgcac tgttcccagg aacagagttc 
001801 aagcagacac aacaaagaaa acttttctaa agtgcgccga gtttgatttc tgtgcaattg 
001861 ttggttggtt caccagataa taattactag gttcactacc ttcactaatg gcaagtccgg 
001921 aattcattgg tcagacctcc catgcatcta cgagaagtct tgatctgacc aaacatgtat 
001981 gttttatggc tctattattt ttcaggtgga gaagaatgaa ctccgtgatg agaaagttac 
002041 tctgaaggca gagaaggaga ggctggaaca gcaagttaaa gcattgagtg ttgctcctac 
002101 aggatttgtt cctcatctcc ctcatccagc tgcattccat cccgctgcat tccctccatt 
002161 tataccacct tatcaagctc tgggcaacaa aaatgctcct acgcccgcag cattccaagg 
002221 gatggcaatg tggcagtggt tgcctccaac tgctgtggac acaactcaag atccaaagct 
002281 ttggccacca aatgcttaat taggtgcaga ctagctatgc tgctattcat ccattggcag 
002341 atcaaaatgt gttcggtctt cctggagagt aaaatagtcc gcgatgctgt ccattacgtg 
002401 gtaaactgtt cttttattgg agttctgttt ttaactcgtc ctattgaggg gcgatgcctg 
002461 taattaatct ggatcgtaac cctcttgcct ggtgaatgct ccacaaactc tcatgtccct 
002521 cgcatgagtt tgttcaagtg tggaagttgt gactgtgcta ttattttagc attggcttgg 
002581 cagtacttgt tctgtttcta gcaagagttt cgcatgtgag cacatgcata gcaatatagt 
002641 atgttctaaa tt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BJ459227 rbaak36d08 467
more... (Total Hit Count: 3 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ939340 whchan31p20 700
more... (Total Hit Count: 20 )
/rice/oryzabase