cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK103266     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os02g0513100 ( IRGSP 1.0 )
RAP - Chromosome No. 2
RAP - Location, Length 19,202,405 -  19,205,133  ( - );   2,729(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 19,202,405 -  19,203,304 ( - );   900 (bp)
Exon 2 Location 19,203,408 -  19,203,780 ( - );   373 (bp)
Exon 3 Location 19,204,240 -  19,204,276 ( - );   37 (bp)
Exon 4 Location 19,204,882 -  19,205,133 ( - );   252 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os02g0513100 Os02t0513100-01 J033124G19 214114 J033124G19 15222 LOC_Os02g30910.1 AK103266 21212 AP008208.2 255670529 BAF08858.1 113536475 NC_008395.2 297600179 NM_001053479.1 115446328 NP_001046944.1 115446329 Q6K602 SWT15_ORYSJ


Chromosome: 2 ,  position: 19,202,405 - 19,205,133 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 catgaaccca agccacatct tagcttaatt acatagctcc tcctcctttc tccactgact 
000061 gctcagtgtg ttttgcatct ctccattgag caagaggaga agggaggctc agctagctag 
000121 ctagctacca tctatactag tatcaagttt ttttgttcag atttttttgt tggaggaaga 
000181 gttctaggga gatcgatatg gccttcatgt ccatggaacg cagcacttgg gccttcacct 
000241 ttggcatctt aggtacatac aggcatcaac atgctcatga atgctgcatt catctcatgc 
000301 atacggtggt ctttctagct gttatattag cttactctgt tcctttgatt tgattaatcc 
000361 gtgcatgcat gttctcccat attgttggag acacattatg gcagcatgta tcgatcttaa 
000421 ttcccacaac cgcacaagca atgtccctga aaaccgcagc aaaacaccca ttggaatcaa 
000481 gttttcttag ttaactagat caataatctc ctttgttgct tctgtcacct taattagtac 
000541 tccagtgtgt cttcctcaat atctttcaaa gctagtgttt gaacaaaaaa aaaagaacta 
000601 gtgtttctgt cctgaataaa tggaactgct aaacaaaact tttaggctct aatcaggtag 
000661 ttactctaaa cagagaaagg gagccatcac gcatgttagt tagaaacgta cacaccttat 
000721 ttttttctct ttttagtttt taccatgcac catgcatttc ttttctctgt ttgcctctct 
000781 ctctctctct ctctctctct cttttgtatt ggctgacatc actgataacc cgtgtctgcc 
000841 tttgatcttt tttgcaggta acttaatctc actaatggta ttcctttcgc cactgtaagc 
000901 acctcaactt gcttcaattt ctatcaagca catgcataac attgttttgt taggttttta 
000961 aaataataat actagttcag tatgtacaaa aaaaaaagca tcacacatgt caatgataca 
001021 catgaagggt caccatcatc tataccattc tagaattcag catacacctg aaggcaacat 
001081 aactctgaag atttctacta atgaattctc acaatagtca gctgaaggtg gaaagaaaaa 
001141 aaaaatctct cagcacgtca cttttagcag agtaattgtg tgtgtccttg taggcagttg 
001201 tagttccatt attgagacga cacagatcaa gcatgagttt aacttccatt aatcagacga 
001261 aagaaactgc tgttagctag tttgttgata actaattatt agcaggttga acaataactt 
001321 aaccgtgtgt gcatgcgtgc gtttggcgtg caggccgacg ttctaccggg tgtaccggaa 
001381 gaagtcgacg gaggggttcc agtcgacgcc gtacgtggtg acgctcttca gctgcatgct 
001441 gtggatgtac tacgcgttcg tcaagtccgg cgccgagctg ctggtcacca tcaatggtgt 
001501 ggggtgcgtc atcgagaccg tctacctcgc catgtacctc gcctacgccc ccaagagcgc 
001561 caggatgctc acggcgaaga tgctgctcgg cctcaacatc ggcctcttcg gcgtcatcgc 
001621 gctcgtcacg ctgctgctct cccgcggcga gctccgcgtc cacgtcctcg gctggatctg 
001681 cgtcgccgtc tcgctcagcg tcttcgccgc tcccttgagc atcatcgtaa gctagcaaac 
001741 gaatgcaatc ttgatgtctt gctaactaat cgctcgatcg atcaaccagc agctgatgac 
001801 aaggttctga tgattgttgt gttttgcaga ggctggtgat ccggaccaag agcgtggagt 
001861 tcatgccatt ctcgctatcc ttcttcctgg tgcttagcgc ggtgatctgg ttcttgtacg 
001921 ggctgctcaa gaaggacgtg ttcgtggcgc tgcccaacgt gctgggcttc gtgttcggcg 
001981 tggcgcagat ggcgctgtac atggcgtacc ggagcaagaa gccactggtg gcgtcgtcgt 
002041 cgtccgccgt ggtggcggcc gggctggaga tcaagctgcc ggagcatgtc aaggaggtgc 
002101 aggccgtcgc caagggcgcc gtcgcggcag cgccggaggg caggatcagc tgcggcgcgg 
002161 aggtgcaccc catcgacgac gtgatgccct cggaggtggt ggaggtgaag gtggatgacg 
002221 aggagacgaa ccgtacggac gagatggccg gtgacggcga tcacgctatg gtcagaacgg 
002281 agcagatcat caagcctgac atggccattg ttgtggaagt gtagtctgat taagcttaga 
002341 gaactagtag taattctctc atgtgaggta tagccagcta gctggtggta cacaaacata 
002401 aacacgaaca catgttcatc gcgtacgtac tagctactag gtgagacacc tcttggcgta 
002461 gtacgtacag tagtactccg gccagatcta gtagggactg tattggcgcg tgactcgcct 
002521 ggttcgtcca gcttgcatgc agagaccgac cgagcaagca agctaattaa gctggcccga 
002581 ccgaccgagt gcatgcgtgt tttgtgaacc tagctactga ggggggagtg aagggtgtgg 
002641 gtgtgcaatc gaccggcctg tcgcgtcgat gctcttgctt agcttcattc gattcatgca 
002701 gttcaataat aaaatttgga ttttactgc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ717501 whvd16d11 721
more... (Total Hit Count: 11 )
/rice/oryzabase