cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK100988     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os02g0196600 ( IRGSP 1.0 )
RAP - Chromosome No. 2
RAP - Location, Length 5,404,703 -  5,410,606  ( + ) ;   5,904(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 5,404,703 -  5,404,868 ( + ) ;   166 (bp)
Exon 2 Location 5,405,548 -  5,405,810 ( + ) ;   263 (bp)
Exon 3 Location 5,406,654 -  5,407,399 ( + ) ;   746 (bp)
Exon 4 Location 5,407,575 -  5,408,046 ( + ) ;   472 (bp)
Exon 5 Location 5,408,129 -  5,408,296 ( + ) ;   168 (bp)
Exon 6 Location 5,408,802 -  5,409,056 ( + ) ;   255 (bp)
Exon 7 Location 5,409,165 -  5,409,287 ( + ) ;   123 (bp)
Exon 8 Location 5,409,395 -  5,409,880 ( + ) ;   486 (bp)
Exon 9 Location 5,409,976 -  5,410,606 ( + ) ;   631 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os02g0196600 Os02t0196600-01 J023145H17 211830 J023145H17 14093 LOC_Os02g10290.1 AK100988 32677 AP008208.2 255670529 BAF08107.1 113535724 NC_008395.2 297600179 NM_001052728.1 115444826 NP_001046193.1 115444827


Chromosome: 2 ,  position: 5,404,703 - 5,410,606 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 accaaatata aatcaaatcc caacgtgacc tcccccgcgg ccgcggcctg cttcacgcct 
000061 ccctcctcct cgccgcctcg ccgcctcgcc tcgcctcgcc tcgcctccac cgcctctact 
000121 aaaccctccg ccgccgccgc cgccgcggtg atcaccggcg gccgaggtaa gccgccgctc 
000181 tgacgctccc tcttgacgga cggcgcgttt ggtctcgccg cctttggcgt tccgtgtttt 
000241 tatcttcgcc cggattccgg atggattttg attttgattt tttttttgtt tctgtttccc 
000301 ccaaataccc ggggccttgt ttgggttcgt ggagataaac gcgtagtagg cggagttgct 
000361 gcgggcgccg cctctttttt ttcttgttcc tcttttgtca aatggacagt tcgttggttg 
000421 tcgttggcgc ggtggagttg gatttgtggg attttttttt ctcgggctta atgcaagtgg 
000481 tggttaaaca atttgcttca acgctatcac tgaacttaga atgtaccaaa aagatccaaa 
000541 cagtttgatt taatgttatt ttactaacaa tttggggggg aggctgcacc tgttagtgct 
000601 taccaggact atacttttgg ggatttttaa ggagtttaca tctgtactga gttcataatt 
000661 atctgtactg agttcataat tatctgtacc gagttcataa ttcatagttc aagttgtact 
000721 tgcagtacag aagtttgtgc tggattatga gaagctatta ttatatctta ccaattggct 
000781 gtaaaatata gcatggacat atgaccatct aaatttatgt tggtttttgg ttgttcctgg 
000841 gacagggatg gagcagaatg gagagaacca tctcaaagat ccacttcttc aggcagatgg 
000901 aggcggctcc ggtgcttctc ccgccggggc gtcgccgcgg aaggagagga agacgaggaa 
000961 ggtcatgttc aatgtccggg ggatctcgtg tgcttcgtgc gccgtgtcga tagagacggt 
001021 ggtggctggc ctcaagggag tcgagagcgt ctcggtttcg ccgcttcagg gccaagctgt 
001081 tgtccagtac agaccagagg aagccgatgt aagattgcct tgagctgacg gtcttgttct 
001141 caactgcact agatttcccc agcatgggag ggacaatttt gggtgtttct catcatgggg 
001201 caaaatagga tttaggattc aatgcatatc tatattgtcc ttattcaagt tattgtgggc 
001261 cagttctcta tttgactagg agtatatgtc tgcaactctg catgaattta attccagcaa 
001321 tatggtggtt ttgaattcca ggagctgaat tttatcctgt agatgtcatg atttaggtaa 
001381 ttaggataca tgaaaatttt gatttcagct ttatattggt cattcatata aggtccacga 
001441 gtaagtacta cgaaccagtg actatcttaa caatcttttt tgtcagcgtg ggccaaaccc 
001501 ttgacaatga ctgtgcaatc atatgatgac ctttatacct catcgagttc atgttctcca 
001561 ggcctggaat attgaattac ttcgcaatca tatgatcttt tttacctctt actcagaaat 
001621 ttttactagc agtttggttc gaatcagtat ttatcaaggt tctaaaaatt ggtaactggt 
001681 acttgacagt tagtgaccat atagcctgtg atgtcaagtt caggctcatg tagtctcatg 
001741 ttctttgtat acagttgcca tcatgcaatt gccagttagg ctgtatagtc actaatgagt 
001801 gcaccaactg gtaacttttg tctgcatgga catgctttca gttcactaaa ctcatgtata 
001861 tttcaagttg cactcatgaa gtaatgacag gatattttac ggtttggcat tattttccat 
001921 ctgttctcag tttggattct tattcttcca ggcaagaacc ataaaagaag ctatcgaagg 
001981 cctcaatttc gaggtcgatg aacttcaaga acaggaaatt gctgtatgca gactccagat 
002041 aaaaggaatg gcatgtacaa gctgctcgga atctgtggag cgagcacttc agatggtacc 
002101 tggagtgaag aaagctgcag tgggacttgc cctagaggaa gctaaagtcc attttgatcc 
002161 aaatatcaca agtcgtgatc ttataattga ggctattgaa gatgctggat ttggagctga 
002221 tctcattagt tccggggatg atgtgaacaa agtccaccta aaactagagg gtgtgagttc 
002281 cccagaagac atcaaactca ttcagtcaag actggaatct gtcgaaggtg tgaataacgt 
002341 ggaatgtgac acagcgggac agacaataat agttgcatat gatcctgatg tcactggccc 
002401 acgattactt attcagtgca ttcaggatgc tgcacagccc cctaaatact tcaatgctag 
002461 cttgtattca ccaccaaagc aaagagaggc agagcgccat catgaaatta ggaattacag 
002521 gaatcaattt ctttggagtt gcctgttttc tgtgcctgta ttcatgttct ccatggttct 
002581 gccaatgatt tctccttttg gggattggct gttttacaaa gtatgcaata acatgacgat 
002641 aggtatgcta ttacggtggt tgctgtgttc tccagttcag ttcattattg gttggaggta 
002701 caatcccatc tctcgaacag cttcttcttg atgttgtttc atgttcctta tctcaagtct 
002761 tttgtttatt gtatttagcc taaatataat gttgccttcg tttgtttcct tcattgcaca 
002821 catgcactat aaatcatgtg tggttattca ctatgtgtta ttttactgac agattttatg 
002881 ttggagctta tcatgcgcta aaacgaggat actcgaacat ggacgtgctt gttgctttgg 
002941 ggacaaatgc tgcatacttc tattctgtgt atatagttct gaaggcacta acatcagagt 
003001 catttgaagg acaggatttc ttcgaaacta gtgctatgtt gatatctttt atattgctgg 
003061 ggaaatatct ggaggtggtg gccaaaggaa agacatcaga tgctttgtcg aagttgactg 
003121 aacttgcacc agaaacagct tgtcttctta ctttggacaa agatggaaat gccatttcag 
003181 aaacggagat cagcactcag ttacttcaga gaaatgatgt cattaagatt gtccctgggg 
003241 aaaaagtccc tgttgatggt gttgtcatca aaggccaaag tcatgtgaat gaaagtatga 
003301 taactggtga agcaaggccc attgcaaaga aaccaggaga caaggttggt attttttgga 
003361 tcctgattgt atttgctctt gttatgaact agtatcctga tggttcaatt gacttgtttt 
003421 taacaggtta ttggtggtac tgtaaatgac aatggttgta taattgttaa ggtcactcat 
003481 gttgggtcag aaacagcttt gtcacagata gttcagttag ttgaagctgc tcaacttgca 
003541 agggctccag ttcagaagtt ggcagatagg atttcacggt tttttgtccc aacggtaggt 
003601 tcgcttgttt tctcctgcaa attcccttcg tgctatttcc caccagcgtt tacaaaattg 
003661 caacattgct atattctacc tgcctagcta ctggttaata acaactggct acggaggtaa 
003721 tcgaggtatt tatcctagac agtagacaca tagtcaactg cactggaaac tttacctgta 
003781 ctggtcacta gttatcgcac taataatttc ttggtatttc taccctagac ttagtcagca 
003841 ttcatctgga aactttcttg aacctacccc agcttctact gtagaatcgt agagcaaatt 
003901 atattcaatt tagtggagta gcagttttaa ctctactcct taccaagttc acctcctctg 
003961 taaacagctg gttacttatg agaaatgtta ccctgattga tacttgcaaa tgtttcctaa 
004021 ctacttttga tgcttctcat gcatactttc tgtgagatcg tctctttctt catctcatat 
004081 tggtccctct cattttaagg ttgtggtggc tgcatttctt acatggcttg gctggttcgt 
004141 agctgggcaa ttcgacatat accctcgaga atggattcca aaggcaatgg atagctttga 
004201 gcttgctctg cagtttggaa tatctgttct tgttgttgca tgcccgtgtg ctcttggact 
004261 ggctaccccg actgctgtta tggttgccac tggaaaaggt gcttctcaag gtgttcttat 
004321 taagggtggc aatgcacttg agaaagctca caaggtaact gagatgattt ctatgtcatg 
004381 tattattttt tctcacatca aatgtattct atttttttta tattgtgaca ctaaactatt 
004441 ccttgtattt ctttatgtgc aggttaaagc tatcatattt gataaaactg gaacgctgac 
004501 tgtcggtaaa ccttctgttg ttcaaacaaa ggtgttctcc aagataccgc tactagagct 
004561 gtgtgatttg gctgctggtg cagaggttgg cttcttagat gcaaatgcta ataatttttg 
004621 ttgaatgtcg tgtgatgttc ctagtttgct gtctcatgtc atctaacctt aacttttttc 
004681 taactttgtc aggcgaacag tgagcatcct ctatcaaagg ctattgtaga gtacacaaag 
004741 aagctcaggg aacaatatgg atctcacagt gaccatataa tggagtccaa ggactttgag 
004801 gtgcatccag gggcaggggt gagtgccaat gttgaaggca agctggtgct ggttggaaac 
004861 aaaaggctta tgcaagaatt tgaagttcca ataagttctg aagtagaggg acacatgtct 
004921 gaaacagaag agcttgctag gacctgtgtg cttgttgcta tcgacagaac catctgcgga 
004981 gctctttctg tgtcagatcc tctgaaacct gaggcaggcc gtgccatttc atacctcagc 
005041 tcaatgggta tctcgagtat catggtgacg ggcgacaatt gggctacagc taaatccata 
005101 gctaaagagg tcgggatcgg cacagtattt gccgagatcg atccagttgg taaagccgaa 
005161 aagatcaagg acttgcaggt gcaatctttt ctccttgcag caaaaacaaa gttggaatag 
005221 atcacagatt ttaccaccat tattccaact tacatcacat catttgttca cagatgaaag 
005281 ggttgacggt ggccatggtc ggcgacggga taaacgactc gccggctcta gccgctgcag 
005341 acgtaggcct ggcgattggg gctggaaccg acgtcgccat cgaagctgcc gacattgtcc 
005401 tgatgaggag cagcctcgag gatgtgatca ctgccatcga tctctccagg aagaccctct 
005461 caagaatccg gctcaactac gtctgggctc tgggctacaa cgtcctgggc atgccggtcg 
005521 ccgcgggcgt cctgttcccg ttcaccggca tccggctgcc gccatggctc gccggagctt 
005581 gcatggcggc ctcgtcggtg agcgtcgtct gctcgtcgct gctgctccag ctctacaaga 
005641 agccattgca cgtcgaggag gtggctgctg gacccaagaa tgacccggat ttggtgtgaa 
005701 gactgaagaa gcgtcggtct tgctgtgctg actgaaactg agcatgaagc aaacgccttg 
005761 tttgcagtgg ccctcctgac tgatttctgt acagtagtca tgttttggga ttctctgttt 
005821 ttttttgggt acttctgatt gattcaataa taatttgggg agcttaattg ctatccagtg 
005881 atatatagat gtgaaattgt gttt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ897512 whthkles13d07 717
more... (Total Hit Count: 5 )
/rice/oryzabase