cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK100530     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os02g0182100 ( IRGSP 1.0 )
RAP - Chromosome No. 2
RAP - Location, Length 4,573,828 -  4,578,254  ( - );   4,427(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 4,573,828 -  4,574,200 ( - );   373 (bp)
Exon 2 Location 4,574,653 -  4,575,693 ( - );   1,041 (bp)
Exon 3 Location 4,576,088 -  4,576,164 ( - );   77 (bp)
Exon 4 Location 4,576,265 -  4,576,657 ( - );   393 (bp)
Exon 5 Location 4,577,230 -  4,577,382 ( - );   153 (bp)
Exon 6 Location 4,577,938 -  4,578,254 ( - );   317 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os02g0182100 Os02t0182100-01 211371 J023101H04 13854 LOC_Os02g08500.1 AK100530 22587 AP008208.2 255670529 BAF08011.1 113535628 NC_008395.2 297600179 NM_001052632.1 115444634 NP_001046097.1 115444635


Chromosome: 2 ,  position: 4,573,828 - 4,578,254 bp

   Now loading


#
#
Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 tttggtggtg gtgctcgctc tcgctcaccc tgctttgacc tttggatttt tatttttaag 
000061 gatccaagaa agtgctgttt cttgggttgc ttggaggtgg aggagtttgg gagattgttt 
000121 gtgtttgatt gattggttga ttgattggag gaagatgacg gtggaggaga ggcaggggag 
000181 ggtgggaggc catggtgtga gcggcggcgg cggcgggaga gaccagttcc cggtcggcat 
000241 gcgggtgctc gccgtcgacg acgaccccac ctgcctcaag atcctcgaga acctcctgct 
000301 tcgatgccag tatcacggta tgctgctaat ctgcaatctc tctctctctc gagctcgagc 
000361 gagcgagcga gcgagttctc tccatggttg tggattgagc ttgtgctgta tcgatcaatt 
000421 tttttttcgt tttggtttag tactgttcta tagttgtttt ttttctctct ctctcttgga 
000481 tttaattttt gttttttttg gtgatgcgct agttcttctt tgcttggctt tcacagtttc 
000541 actcgtagat gtttctgttg ttcttggtgg tctatttctt cggccatgta atgtcaactc 
000601 aagaacgggt tttgcccctt tcctcttaaa aaaagttttt ttcccctctc ttttcttcga 
000661 tataatttca acccttctgt ctgaatctcc aatcctttct actgttcttt gggttgcaca 
000721 catggtggtt gtgtaaggat tatcttctgc tgaccttttt tccttgttgc agcaaaatag 
000781 tagtagtact aattcttttg ataattttga cttgcctatg tattgtgttg ttgaatctgg 
000841 cctgattgga tttgatgtgg tgtgatttgc agtgacaaca actggtcagg cggccacggc 
000901 cctgaagctg ctcagggaga acaaggacca gtttgacctg gtgatcagcg acgtccacat 
000961 gccggacatg gatggcttca aactccttga gcttgtcggc ctcgagatgg acctcccagt 
001021 cattagtaag tcatgctttg cttgatctga tgtgtcattc ttgtaaccag agatagtatg 
001081 ttctagtaag atgcgtgtgg attgcatgag atctagacat ctagtgagtg attttacttc 
001141 atttgaactg cttgggttgc agatacatga ttatttatag caataaggta gttagctgaa 
001201 aatggcaaca agtgtgagac atggaaaact catgaaattt cttggttcaa atctattttt 
001261 ggaaagctcc tttctgtttt actgttggtt tggtgcgtag gtcaggtaac cgatgaaagt 
001321 ttcctaatgc gaaaatttgg tagataccgt cacgtttgct cttgttagtt accctgattg 
001381 ccttgcacaa atgactatga tgctgtatcc tcttacttct cagccagttt tttttttttt 
001441 tttttacatt tatttggaac gttctcctgc aaactgactg agaaacatca ggtcgaccaa 
001501 cgatgtttgc gtttatgtta acgcggatct aataacatta ctttgactgc attcatgaac 
001561 cttaccttac attctgaatt gactatctgt catgtagtgt tgtctgcgaa cggggaaaca 
001621 caaactgtca tgaagggtat aacccatggt gcatgtgact atcttctgaa gccagtgcgt 
001681 cttgagcagc taaggacgat atggcaacat gtgattaggc gtaagaattg tgatgctaag 
001741 aaccgtggta acgatgatga cgctggtcag aaggcacagg gaatgaacaa tgaaggtgag 
001801 agtattggtg ctaaccgcaa caagaggcag tcacggaaaa gtagagatga gaatggagat 
001861 gatggtgatg attctgatga gaacagtaat gagaatggag actcatcaac acagaagaag 
001921 ccaagggtcg tgtggtctgt tgagctgcac cgaaagtttg tggctgctgt taaccagctt 
001981 ggcatcgaga gtaagataat ttctcacaac ctagctactg agaatattgg ctggctattt 
002041 ttcttagttc aatgtcatat gtgttaatat ttgtatgctt gttttttcag aggctgttcc 
002101 aaagaaaata ttggatctca tgaatgtaga gaacatcacc agggagaatg ttgctagtca 
002161 tttgcaggtc gaatttcttt ccttatcttt gaccgttcat ttcatcatgt tgtttactat 
002221 ggtttatcac tgcaccaaat tattgttatt attgtcccag atatctgaaa gaggattttt 
002281 tttaatatat gataatacag ccctaaaata ttcctaattc atattgttgc atgttctgta 
002341 ttttgttgag ttctttttca gtatttgtac gagaagcaaa atataacatt tatgttctca 
002401 taccattttc ctagtatatt gattgtgcaa tcgtaagtac taattcacca gtgttaaatt 
002461 cagagttttg ctaacctatt catttcttag ctattttttt tcctcttgtt tgcacctaca 
002521 agtatacttc actgatgttt cttctctgct tgtcatttca gaagtatcgg ctgtacctta 
002581 aacggttgag cactgatgca agcaggcagg ctaaccttgc agctgcattt ggaggaagga 
002641 accctgctta cataaacatg aattcatttg gaaactacaa cgcatatggt agataccgta 
002701 cagtcccaac tgctggccat acccaggcaa acaacattct tactaggatg aactcccctt 
002761 ctgcgtttgg tgttcatggt ttgctgcatt cacagccaat tcagttagga catgcccaaa 
002821 ataatctgag cacttcactg aatgatttag gagggcttaa taatggtaac atgatcagag 
002881 gtgcacagat gtcaacaatt ctaactggtc cttctggtaa ctcctttcca aacatatcga 
002941 atggtgcacc gctggcaact gcaaacagat cactgcaacc tcttgagtcg agcaatcagc 
003001 aacaccttag tcgggtgcat tcatcttctg cagatccatt tagcacactt gttggtgagt 
003061 ctccccagtt tcctgatctt ggaagaacca ccaatacttg gcaaactgcg gttccatcca 
003121 acattcagga tcgtggtcac aatgataaca tgtcgcaagc caccctgcat atgaatggcc 
003181 ccaaaattga acctgtctca agcttcacat catccaatca gattccgctg ctgggaaatg 
003241 agatgcaggg ccaagtagca tcactagcta gcaatgttcc aatagcattc aatcaggaca 
003301 catcaccatt caactatgga agcagcacaa actcaagaga catgctaaat aacagccatg 
003361 tatttagtaa ctccagcatc aacacatcgt tgcccaacct tagcttagac aatccggctg 
003421 taccaaggca gacactggat cgtgggaata cgggcattgt ttctcccatg caagatggaa 
003481 ggattcatca ccaagctgtt agcaatcagc taaactataa tgacgatctt atgcggacaa 
003541 ctgggctgca aaggggtctc agtggtggtc tagatgacat tgttgttgac atgtttaggc 
003601 cggtatgatt ctttcttgta tttatttttt agaagagtat tctatattgg tattctgttt 
003661 cagaattcta ttgctttgtg ttgttcaagc agatcagtct ttagtgacct atgaaaattt 
003721 ctggacacag tagtagtcta tcaaacactc acttttctat ggatgtgcgt tactcatctc 
003781 tattcatatg tagtccacaa gcatgttcat gtttgattcc ttcaagatat tttctgctgc 
003841 atagtaccac ctttaatcct ttgcagtctg cactatatta ttatagtatg aaacagcaac 
003901 atatgtattg aaatatttca tattcgttct gaagagattt ctaagtttag tttcagtacc 
003961 acatatttct taatcaatat gttaactgcc atgctgggaa gtacaaacaa tgagtatact 
004021 atgtatctga caacgccatc tttcatcgat gcaggaccgc gaagacgacg gcgttcctta 
004081 catcgatggg gactgggagc tggtctagcc agcctccatt tcaatcatta gtccgcgtac 
004141 gaggtttttc tgcattcgcg gtgtcggctg ctgattggtc catgctcact tgtcagcaca 
004201 aagtggtgtt catagtggct agccttcatc acaagtgcat ttcacatttg gcttcttttt 
004261 tcagcttagt gattattagt tggccagtca gtctgtgaaa tttatgtgga gaaacggcta 
004321 tgtggtgtgt ttttatcatg acttatacta taataactat gttagttcag gtataaccgg 
004381 ttatcctgat aatatagtat gcttggtaaa attctcgtta atcatcg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BJ464665 bags35m14 486
more... (Total Hit Count: 2 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ662210 whkp11o20 723
more... (Total Hit Count: 18 )
/rice/oryzabase