cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK063489     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os01g0357400 ( IRGSP 1.0 )
RAP - Chromosome No. 1
RAP - Location, Length 14,602,630 -  14,604,369  ( + ) ;   1,740(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 14,602,630 -  14,602,778 ( + ) ;   149 (bp)
Exon 2 Location 14,602,880 -  14,603,016 ( + ) ;   137 (bp)
Exon 3 Location 14,603,106 -  14,603,763 ( + ) ;   658 (bp)
Exon 4 Location 14,603,829 -  14,603,845 ( + ) ;   17 (bp)
Exon 5 Location 14,603,934 -  14,604,369 ( + ) ;   436 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os01g0357400 Os01t0357400-01 001116C08 106487 001116C08 2073 LOC_Os01g25510.1 AK063489 23563 AP008207.2 255672756 BAF04924.1 113532541 NC_008394.4 297598437 NM_001049545.1 115436503 NP_001043010.1 115436504 Q0JMV4 AMYC1_ORYSJ


Chromosome: 1 ,  position: 14,602,630 - 14,604,369 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 atcaatccac ccacctccga agtgtatctg cagcatgcag gtaccgatcg aacacaatgg 
000061 tggcgaacaa acacttcttg tccctttccg tgctcatcgt cctcctcggc ctctcctcca 
000121 acttggcagc cgggcaagtc ctgtttcagg taagagatcg acatgagttg ggttggctgc 
000181 atcgaactga tcgtgttttt gtactactga gcctgagaga atgatgctct tgtgtttgat 
000241 gatgatgcag ggtttcaact gggagtcgtg gaaggagaat ggcgggtggt acaacctgct 
000301 tatgggcaag ctaggtggac gacatcgccg ccgccggcat cacccacgtc tggctccctc 
000361 cgccgtccca ctctgtcggc gagcaaggtc cggtgctctc tcgatcccct ccttcgtcgc 
000421 accagccggc aaaatacata cataggtcgt tgaattgctt gaatgctgat ctgcaggcta 
000481 catgctgggg cggctgtacg atctggacgc gtccaatcat cgaggcgttc catggcaagg 
000541 gcgtccaggt gatcgccgac atcgtcatca accaccgcac ggcggagcac aaggacagcc 
000601 ggggcatcta ctgccgactc ccgcctcgac tggggcccgc acatgatctg ccgcgacgac 
000661 ccctacggcg acggcaccgg aaacccggac accggcgccg gacatcgacc acctcaacaa 
000721 gcgcgtccag cgggagctca tcggctggct cgactggctc aagatggaca tcggcttcga 
000781 cgcgtggcgc ctcgacttcg ccaagggcta ctccgccgac atggcaaaga tctacatcga 
000841 tgccaccgag ccgagcttcg ccgtggccga gatatggacg tcgatggcga acggcgggga 
000901 cggcaagccg aactacgacc agaacgcgca ccggcaggag ctggtcaact gggtcaatcg 
000961 tgtcggcggc gccaacagca atgccacggc gttcgacttc accaccaagg gcatcctcaa 
001021 cgtcgccgtg gagagcgatc gagctgtggc gcctccgcgg cgaggacggc aaggcgcccg 
001081 gcatgatcgg gtggtggccg gccaaggcga cgaccttcgt cgacaaccac gacaccggct 
001141 cgacgcagca cctgtggccg tttccctccg acaaggatat gcctacatcc tcacccaccc 
001201 cggcaaccca tgcatcgtga gtagccaact cgattagaaa ttctgaatca tcctgctgca 
001261 aactgatcga tgaactgaag ataaattctg caaaactctt tcagttctac gaccatttct 
001321 tcgactgggg tctcaaggat gagatcgagc gcctcgtgtc aatcagaaac cggcagggga 
001381 tccacccggc gcgggggcgc tgttgctggc tcttgccgag ttgaaaaggg tagatgctgc 
001441 cagagatgga agccacgaga gggacattta cgaatgtgcc catggcccgg ggtatttaag 
001501 gccagcttgt ttactccagt aaaagaaaag tatcaccgat cacgacatat cgtttagaaa 
001561 gtgtgtgagt taggcatggg cgaaccacat cctttacgac taggtctctc gatctgctag 
001621 acgagagatc aaccaacaaa agctacgata catgatatac accgtggcat gatacaaatc 
001681 cttacaaata gcaacaatta ttgttcaata gccatatcag ttgtctaggc ttaccaatat

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK249762 FLbaf51n06 1174
more... (Total Hit Count: 7 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ901102 whthkles24j05 689
more... (Total Hit Count: 7 )
/rice/oryzabase