cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK071630     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os02g0724000 ( IRGSP 1.0 )
RAP - Chromosome No. 2
RAP - Location, Length 30,950,297 -  30,955,069  ( + ) ;   4,773(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 30,950,297 -  30,950,495 ( + ) ;   199 (bp)
Exon 2 Location 30,952,195 -  30,952,890 ( + ) ;   696 (bp)
Exon 3 Location 30,953,387 -  30,953,587 ( + ) ;   201 (bp)
Exon 4 Location 30,953,858 -  30,954,162 ( + ) ;   305 (bp)
Exon 5 Location 30,954,448 -  30,955,069 ( + ) ;   622 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 RNA Nucleotide
Accession No		 RNA
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os02g0724000 Os02t0724000-01 207522 J023105D03 6687 LOC_Os02g49230.1 AK071630 40607 AK071630.1 32981653 BAG92592.1 215701168 NC_008395.2 297600179 NM_001054510.1 115448390 NP_001047975.1 115448391
Os02g0724000 Os02t0724000-01 207522 J023105D03 6687 LOC_Os02g49230.2 AK071630 40607 AK071630.1 32981653 BAG92592.1 215701168 NC_008395.2 297600179 NM_001054510.1 115448390 NP_001047975.1 115448391
Os02g0724000 Os02t0724000-01 207522 J023105D03 6687 LOC_Os02g49230.3 AK071630 40607 AK071630.1 32981653 BAG92592.1 215701168 NC_008395.2 297600179 NM_001054510.1 115448390 NP_001047975.1 115448391
Os02g0724000 Os02t0724000-01 207522 J023105D03 6687 LOC_Os02g49230.4 AK071630 40607 AK071630.1 32981653 BAG92592.1 215701168 NC_008395.2 297600179 NM_001054510.1 115448390 NP_001047975.1 115448391
Os02g0724000 Os02t0724000-01 207522 J023105D03 6687 LOC_Os02g49230.5 AK071630 40607 AK071630.1 32981653 BAG92592.1 215701168 NC_008395.2 297600179 NM_001054510.1 115448390 NP_001047975.1 115448391
Os02g0724000 Os02t0724000-01 207522 J023105D03 6687 LOC_Os02g49230.6 AK071630 40607 AK071630.1 32981653 BAG92592.1 215701168 NC_008395.2 297600179 NM_001054510.1 115448390 NP_001047975.1 115448391


Chromosome: 2 ,  position: 30,950,297 - 30,955,069 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gtgcttctcc acctgttgtt ccattttctc ctcgcttatc tcttcctcgc tcgctctccc 
000061 tttcgcgcac cagaaaagtc gttttttaat tttcgagttt ccgtggaaga ttctcgatac 
000121 ctgtccctcg tcgtcgtcct cctccgccgg ccgccgccga cgaccgcagc aggggtggat 
000181 ccggggcggc gccgattcgg tgagtccggt ctcgcgagct cgagctgttt gtttgtttgt 
000241 ttgtttggtg gggattggat tgggttggat ttgcgttgtg taggctagcc gcatcagcgc 
000301 cgcttgtttg gtggatttcg tgagctgctg ctggattagg gggctgggat tgggattggg 
000361 aggggggatg gatcatggat gtcggtggat tgggggggat tgggtttgag tgttcgattt 
000421 cgagtccgct tgatcgtttc tgtggtgttc cagggtgttt ggtgttgggg agtctgaact 
000481 gattttttgg ttttctttct ttttgcggac acttcacgct ttctctcgtg ttgcgtggag 
000541 cgtacgtgag tggtttttgg tccggcttta gctttgagct ggactttagc tgctcagaat 
000601 ttgattattt ttctttctct aattggagta catacaagta cgatggctta gcatgtttca 
000661 gtatccagtt cagttttcaa ctagaaaata ttaacaattt catcccctct gcccttttgt 
000721 ctactgacat aatagtcgtg tagcggcaac tgcggttaga tgcagaaagg aagccctttt 
000781 gtattcttaa atttggataa tcttaaaaaa caaaataaca tttctcttgc ttatttgagt 
000841 ggctcagaaa gtttgttgct tttatccaca cacggcatgc tttatatgat cagagaagtg 
000901 gggttagtgc tatttaaaac ttaggattag tcccgataaa attgtttgta ttgtggagat 
000961 gcatgcttgt tgatttacat gattagtgct cagaaaaggt gcccttttga tatgcaaaat 
001021 aggacatacc agcgtcaaaa ataaagggac ataataaaat gagcaaccag gatcattgtt 
001081 ggatgcacag ctggtgaagt cctatttgta ttgccgcttc tagctcttgc ccatgcatgc 
001141 taataagcca tcccatgctg gtacgaaaag tgacttttat taactcagaa atgctatcaa 
001201 ctgcagctag catttgtttg ctgcatagct ccatgttgct aatttcatgt ttttccattg 
001261 ttatcagatg cattgtactg ctctctgcta gacttgtcta gtgaattggt gttattgacc 
001321 cttatttttt aaacatggat acttttttcc cccttatatg ctttacagag aacatgcgct 
001381 tacaggttac agactgacag tacataggat agaagataaa accgtaacat ttaccaagaa 
001441 aaacttcctg caagtagttt tgtgcccttc tatttcagag acttttgagt tctttatgcc 
001501 cttgctagca aatcttgggt gggataataa aactcaaaac tcttcacaaa ttgttatacg 
001561 ctacctatat tttaaattgt tactaagtca atgaatatat tgattgctct tgttgtgata 
001621 catttgaaat gtttctgttg gttgcagagc aattcaagtg gttcatttca tggcctgtat 
001681 caatatactt atatatctcc aacacttacc aaggaatgga aacaaactca tcatgtaaca 
001741 tgggctgcaa aatctgtccc ttcttttcta atttgaagtg tgcacatatt tgctatattt 
001801 tccattaaaa aaatatacta ctctctttcc ataatgttca attataagtt tgttgttttg 
001861 ttgttactga tttttgtttt tggctttttg cacaccagta tcctggtagg atcccactga 
001921 attcaactgt tgaacaaaaa gccaggaagg tggctgttct tgtggcactc agtgctagtg 
001981 gaagtgctcc agtactgtac aggaccatgg atgctctttg tgatttctgc agggagcaaa 
002041 ggtcaatggt ctattgccga tcagatgcag catccttgtg cttgtcgtgt gatcgtaatg 
002101 tgcattcagc caatgccctt tcccgacgcc atacaagaac ccttctttgt gatcgttgtg 
002161 ttggacagcc tgcagcagtc cgttgtcttg aagagaacac ctcactttgc caaaactgtg 
002221 actggaatgg acatggggca gcatcctcag ctgctgggca taaaaggcag accataaact 
002281 gttactcggg gtgcccatcg tcggcagagc tctcgagaat ctggtccttt agtatggata 
002341 tcccaactgt agctgcggag ccaaactgtg aggaaggaat aaacatgatg agcattaatg 
002401 acaatgacgt caataaccat tgtggtgctc cagaagatgg ccgcttgttg gatatagcta 
002461 gcacagcact catgagtgat ttacctacag gagacaagtt caaaccttta ataggttctt 
002521 cttcaggaga tgggatgaat cttctgccac ttaattcaga tcagccagct gagccagttt 
002581 caacgacgcc taaggtgcat gcttctcatt cccctccaaa acctattcaa gtattctgct 
002641 aagtttctgc ataggtcata acatattgca tggacatatt attacaccaa atgttcacac 
002701 tgcgtggttg cggtttcgac catgtacttt gttttggtat tcttctagaa gtgaacgttc 
002761 gaagggaaaa ctttctgtag tttgaccaat ggtacaatga ccatcttttg gtcattattt 
002821 attactgttt gctactttct taagagttcc acactgtcaa agctttcctg gtgtttttct 
002881 cctgccgagc aagttactct tatcttctaa taattttacc attgaatgtg aattcaccta 
002941 gatcttataa ttccctaatg atgatggttg aacaattgct gcagttggaa tttgtgtatt 
003001 tccaatatca ttattcatga aaatgtcatc tgcgatgcct gtcattatgg tgtcactgcg 
003061 tgcttatcga aacttggttg cataattcag gcaccctgtg tcacagacaa agatatgttc 
003121 aatgatggga gcgtatatgg agacttctgt gtggatgatg ctgacctaac atttgagaat 
003181 tatgaagaat tattcggtac ctctcacgtt caaacagaac aactctttga tgatgctgga 
003241 attgacagtt attttgaaat gaaggatgtg ccagcagatg aatctaatga ggtccgtacc 
003301 tttctgcata tagtcttttt atctgctgtg tttgttgtag gaaaagagct ctgttttgct 
003361 atttctgacc ttcccgccat aatcagggtt aatctcgttt tcctccattt gtgcttatat 
003421 cgagttgacc ctaccatttt actgagaatc attaaatgat tgattgggtt aattaggagt 
003481 ggaatgtctg catatctcat cgtccatttt atggctatta attattttac taaaattttg 
003541 gtatgactgt tatactttca gcagcccaaa cctgtgcagc cagaatgtag caatgtcgca 
003601 tctgttgatt ctgggatgtc aaacccagct gcaagggctg attccagcca ttgtattcct 
003661 ggtaggcagg ctatatccaa catatccctt tccttctctg gtttgactgg tgaaagcagt 
003721 gctggatatt ttcaagattg tggggtatcg tcaatgatcc ttatgggtga gccaccctgg 
003781 catcctcctg gtcctgaaag ttcatctgct ggaggcagca gagataatgc tcttacacgg 
003841 tacaaggaga agaagaagag aagaaagtaa gtgcatctta ctgtgctttt tcagtttttt 
003901 gaaagtaagt tcatactagt acttgatatg ccatggttaa atgcattaca gctaagaatg 
003961 tggctgcagt atcattcaat tttcagattt ggaattctat attaaaaagc ttactgtgcc 
004021 aaatcgatat tttcgtatac acgtgatcat tttagacatg tggatgcttg ctcctagtgt 
004081 gaatgctact ttatgttttt cttaaaagaa gttattatat ggcctttctt cacatatttt 
004141 cttcttaaca gatttgacaa gaagataagg tatgcttctc gtaaggctag ggcagatgtg 
004201 agaaaaaggg tcaaaggacg gtttgtaaag gctggcgaag catatgacta cgatccgctg 
004261 agccaaacaa gaagctacta aagcctttca ctcgattggt ttcgtccagt gttcaagtag 
004321 caattttcag cagctgattt gatgttggtt gcacggcaag catgatcact ggagaacaca 
004381 agcaattgcg gcagaccttg caattgaaaa cggggaaagg aaaccaaacg ctgtgatcaa 
004441 atcaaattaa tgaaataaaa aaggaaaaaa taggatgcaa acatgcgaga agctcatgga 
004501 tggtaatgct ccattttctc ctgtacagtt catgcatctt cagttgcttc tggttgagat 
004561 gtctgaatca ctctctacca tctgtgcatt aatcaaatac aaatacatgg gcctaccgca 
004621 cgacgacgaa cgcacctgct tctgttgtga tgttttgtgt tgcggctgtc aggctggatc 
004681 tctaggtaac atgattaatt atactactga tggaatttgc accgctgtaa tattatttac 
004741 gaatcacaat ctgccgtggg attgttcttc tgt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK252666 FLbaf169b05 1919
more... (Total Hit Count: 5 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ701931 whsd7b09 705
more... (Total Hit Count: 20 )
/rice/oryzabase