cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK071557     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os02g0771600 ( IRGSP 1.0 )
RAP - Chromosome No. 2
RAP - Location, Length 33,416,327 -  33,418,648  ( + ) ;   2,322(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 33,416,327 -  33,416,507 ( + ) ;   181 (bp)
Exon 2 Location 33,416,829 -  33,417,058 ( + ) ;   230 (bp)
Exon 3 Location 33,417,651 -  33,418,648 ( + ) ;   998 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 RNA Nucleotide
Accession No		 RNA
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os02g0771600 Os02t0771600-02 207442 J023099D13 2123 LOC_Os02g53180.1 AK071557 25182 AK071557.1 32981580 BAG92555.1 215701131 NC_008395.2 297600179 NM_001054794.1 115448958 NP_001048259.1 115448959
Os02g0771600 Os02t0771600-02 207442 J023099D13 2123 LOC_Os02g53180.2 AK071557 25182 AK071557.1 32981580 BAG92555.1 215701131 NC_008395.2 297600179 NM_001054794.1 115448958 NP_001048259.1 115448959
Os02g0771600 Os02t0771600-02 207442 J023099D13 2123 LOC_Os02g53180.3 AK071557 25182 AK071557.1 32981580 BAG92555.1 215701131 NC_008395.2 297600179 NM_001054794.1 115448958 NP_001048259.1 115448959


Chromosome: 2 ,  position: 33,416,327 - 33,418,648 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gacacacaga cgcactcaca cactcagctt aagcgagcga gcgagtgaac gagagagaga 
000061 gacagagatg gcgagtgttg cctccttccc ggtgatcaac atggagaacc tggagaccga 
000121 ggagaggggc gcagcaatgg aggtcatccg cgacgcctgc gagaactggg gcttcttcga 
000181 ggtgcatatg catgccaagc actagcatgt actaaccagc aaaaaaatgt taatatgatt 
000241 ctagctaatt cctaagtggc cgcacaactt attgatatgt ttcgattttt ttttgttcat 
000301 cgagccacct atacgtacat cgttctttct ggccgaaagg atggaaacat attcttattc 
000361 tccatcttag tcagtcgacc caccaattca atcttatcat ctcagtaggc tcgccggcta 
000421 gaacgcctac taattagctt tgatttgtca tgcttgtcaa agtattaact ttgcatgtcg 
000481 aaattaacat gtgtgaatgc agatgctgaa ccatggcatc gcgcacgagc tgatggacga 
000541 ggtggagcgg gtgagcaagg cgcactacgc caactgccgg gaggagaagt tcaaggagtt 
000601 cgcgcggcgg atgctggagg ccggcgagaa gggcgccgac gtgaagggca tcgactggga 
000661 gagcaccttc ttcgtccgcc accgccccgt ctccaacctc gccgacctcc ccgacgtcga 
000721 cgaccactac aggtatactt accctgcatg catgcgtcat catcaatcat cattaacaaa 
000781 ctcaatttag tctttgttaa tttatctgca tgcttctgaa agaaaagctt aagttgcaaa 
000841 ctcgcctaaa tgatcgtcag tattttaatc ggaagtagta cactcacaaa gcaaaggctt 
000901 acaaagtatc ctagctactg tagagtgtag gcctgaccaa aacctcaaca aagttacacc 
000961 tgacacgacg cgctctacta tagaaatgcc cacttctgta aacagctact gcaaccaaag 
001021 gtgacaggat tatcgaccaa aaggagatgc ttactttttt actgcggctt atccacagcg 
001081 tcgattactc ttgaacggac gtagtggcgc atctctgcac cctttcctac tatgagatag 
001141 taacaagtgt aggaatacac catttttttt ctgttttccc ccggagagga gtatacatca 
001201 tacaacgtgc agtaactatc aatcaatcag aactcacact aactggattc gcttttggca 
001261 aatggcaagt gacttgtgaa tattcgcgag gcctaacaga agcccatgtg tcgcgtttgt 
001321 gtaggcaggt gatgaagcaa tttgcgtcgg agatcgagaa gctctcggag agggtgctgg 
001381 acctgctgtg cgagaatctg ggcctggaga agggttacct gaagaaggcc ttcgccgggt 
001441 cgaacggccc aacgttcggc accaaggtga gcagctaccc gccgtgcccg cgccccgatc 
001501 tcgtcgacgg cctccgcgcc cacaccgacg ccggtggcat catcctgctg ttccaggacg 
001561 accaggtgag cggcctccag ctgctcaagg acggggagtg ggtggacgtg ccgcccatgc 
001621 gccacgccat cgtcgccaac atcggcgacc agctggaggt gatcaccaac ggcaggtaca 
001681 agagcgtcat gcaccgcgtc ctcacgcgcc ccgacggcaa ccgcatgtcc atcgcctcct 
001741 tctacaaccc cggcgccgac gccgtcatct tcccggcgcc cgcgctcgcc gccgccgacg 
001801 cggcggcggc cgcctacccg aggttcgtgt tcgaggacta catgaacctg tacgtgcgcc 
001861 acaagttcga ggccaaggag ccacgcttcg aggccatgaa gtccgccgcc gaggtcgtcc 
001921 acgcggcgcc catcgccacc gcttgataag gatcagactt cactagctac ggctgcgcgt 
001981 gccatgatcc agatatatgg gatgtgtacg gtagtgtacg tggtgctgta catgccgtcc 
002041 cgtgtttttc tgcgtaatgt ttttacgtac tagactacta ctagtgtgtg tacgtaacct 
002101 ggggatgtaa gtatcgcgtc aagtactcaa gtgtgtgtaa cgggcgctct aatcgtattg 
002161 ttctgtgctt caatggctac cacgttagat gggccttgtg ctaatgttgt tttatgctac 
002221 ttccgctgtc gccttagatg ggccttgttg tataatgtct cgtcgacaca tctgtgcttt 
002281 tctgggtgtg tttagttggg gaaaatgaaa ttcttggctg tc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BY837075 baet116d07 481
more... (Total Hit Count: 50 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ875881 whthls1i02 750
more... (Total Hit Count: 113 )
/rice/oryzabase