cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK070645     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os02g0557800 ( IRGSP 1.0 )
RAP - Chromosome No. 2
RAP - Location, Length 21,955,648 -  21,958,366  ( - );   2,719(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 21,955,648 -  21,956,534 ( - );   887 (bp)
Exon 2 Location 21,956,776 -  21,956,999 ( - );   224 (bp)
Exon 3 Location 21,957,237 -  21,957,307 ( - );   71 (bp)
Exon 4 Location 21,957,416 -  21,957,493 ( - );   78 (bp)
Exon 5 Location 21,957,873 -  21,957,979 ( - );   107 (bp)
Exon 6 Location 21,958,071 -  21,958,366 ( - );   296 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os02g0557800 Os02t0557800-01 206464 J023061L14 4656 LOC_Os02g35180.1 AK070645 18337 AP008208.2 255670529 BAF09056.2 255671003 NC_008395.2 297600179 NM_001053677.1 115446724 NP_001047142.2 297599428


Chromosome: 2 ,  position: 21,955,648 - 21,958,366 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 tcttcttctt ctctcgtcgt cgcgtcgcgc gcgggcggcg aggcgagggc gtcgcgattc 
000061 ctcctctttc aaatactccc acggcgagga ccgcggcgag ggcgcgcggg ccattgctgc 
000121 tgcttcttct gctgctgcgt gtgtgtgggt gagacctgag aggatgggag cggaggcggt 
000181 gagggtgctg gtggtggacg actcgccggt ggacaggcgg gtcgtggagc tgcttctccg 
000241 ggcgcactgc ggcggcggcg gcggcgccgc cgccggcgag gcggctccgt tccacggtga 
000301 gcgctaccgt ctcttttggt tctttgctcc tttgctcgcc tcgccgccga cgcatgatcg 
000361 tttgctggct tttcctcgat cctccagtca ccgccgtgga cagcggcaag aaggcgatgg 
000421 agctgctcgg ccggcggcgg ggggaccggg accacctcac cccatcctct ccggcggcgg 
000481 cggcggcggc caacgtacgt cacccatcac catacactgc attgcagatg agccatttga 
000541 tttttcatca cctgatatag gagtgttcat caattctgaa cgaactcggt ctctctcacc 
000601 ccctcctctg acacaaagtc taactcgctc tgttctttct ctgttcctcg gagagaaatt 
000661 taatcccttc actaatcatc actagcagag caacagtgcg gtagtttgaa tgtctgatga 
000721 gttctttgat gaaactcatg ttgccgtaca gtgcaaaatg cctacgtagt gccacatcaa 
000781 attggagatg aatcttttgt catttctttt ttaccctttt cgatttagtc tgaaactaga 
000841 gagatgaaaa tgagaatgga caaatctttg caggatcaag cgatcgacat cgtgctgacc 
000901 gactactgca tgccggagat gacaggatac gatcttctca aagccatcaa ggttgagcga 
000961 tgaagagcat gtgaaacttc ttcaaagatt ctcttttctg tttctgtttt tgtcagttca 
001021 aatgtaaatt tgagcatctg aatttctgaa tctactcagg cgttggggtc gccgaatccg 
001081 atcccggtgg tggtcatgtc gtcggagaat gagccccaga ggatcagcag gtgaagttct 
001141 tggcacccat tctttctcct cttctttgca aaaccatcat caatcaactc gtttgcaaag 
001201 ctgaagatac tgtttttgtt tttgtatatt gatgaaagtt gcttttgcaa ctgtggcttc 
001261 tctccgaaag ccaagatttg cacagctttt cagattcaaa agtcggattt gtgtgtgtgt 
001321 gcatcaccac taacgctaac atgtatgtcc tcttttggtt aaagcagatg cttgacagcc 
001381 ggtgccgagg atttcatcct taagcctctc aagatgaacg atgtccagcg cctccggaaa 
001441 tgctccggcg ccaccaggcc gaagtccgcc gtcgccggag acgatgaccg gtgctgcaac 
001501 acggccaaga aggcggcggc ggcggccgca gccacaccgg agcagcagca gcagcagcag 
001561 agatcgtcgc acctggcagg actagccatg gcatgatccc ttttcttctc aaatgcatat 
001621 caaattaacc ttttgatcaa acatgtcata cgacgatata cctcatacta cctcatacta 
001681 cctagatacc aagaggtacc aaatttataa tagaaaaagt ggtacatcat gatacctcct 
001741 caagtaacgt aaaattgctc taattatata tgctgcggtg atcattggtt aatttgtgga 
001801 tttttgtttt cttgtttttt ggtttttgca ggtgatgaat gcatccagct tcgaggtgtc 
001861 gcactacttc cagctcatct tcaagctcat cctgctcgcc tacgccgtgc tgtgcctcag 
001921 ccagctcctg cacagatggt ccaatggcag cagcctcctc tccctgtggt gcgcatgaat 
001981 tcaagaaatt aaatcaaatc gacgatccag aaggctggat tgattaattt cccattatcg 
002041 atgaaaaaaa ttgaaaaaaa aagagagatg gatgaagact cagtggcata gcgtggattt 
002101 atccgaaact gaaacctctt catcaagcaa gagtgcagct aaggtggact aattggatgc 
002161 atgatgatct ccatcccagc taagcatggg ggttcttaat taattcagct ataatataat 
002221 tttcaacagc catgcatgca gcagcagcta agatgtgatc tttctagggg tagatttgtt 
002281 acttatttgt tcttaaattc tcaagaggat tctaaccagg ttattaatta ttttcagagg 
002341 tttttaagtg gtactatact actactgcta cttagattat tttgctgaga gagaaaagag 
002401 tagcagtaca gtagcaccac aatttgctca tttgtataaa ggggaacgca tgatttgagt 
002461 gggcatctgg tgtcgttttt aatcctgatc tcgatttgat acgctgatgc aactgtccgg 
002521 agaagcttct gcttctctct ctctcccaag atgtgttttt tttttcttct tttttttcgc 
002581 tctctttctc tctgggtggg tggacgtaga cgtccacctg ctctgcacct cacgctgaat 
002641 gagttgaccg gatctcccgt attatatatc gtaatcttgt taaatgttaa gggagaaagg 
002701 agaacagtgt atggtgatc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
BJ255766 whh2f03 645
more... (Total Hit Count: 5 )
/rice/oryzabase