cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK070121     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os02g0761000 ( IRGSP 1.0 )
RAP - Chromosome No. 2
RAP - Location, Length 32,894,932 -  32,900,837  ( + ) ;   5,906(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 32,894,932 -  32,895,355 ( + ) ;   424 (bp)
Exon 2 Location 32,897,558 -  32,897,636 ( + ) ;   79 (bp)
Exon 3 Location 32,898,312 -  32,898,373 ( + ) ;   62 (bp)
Exon 4 Location 32,898,497 -  32,898,596 ( + ) ;   100 (bp)
Exon 5 Location 32,898,673 -  32,898,714 ( + ) ;   42 (bp)
Exon 6 Location 32,899,561 -  32,899,602 ( + ) ;   42 (bp)
Exon 7 Location 32,899,693 -  32,899,847 ( + ) ;   155 (bp)
Exon 8 Location 32,900,498 -  32,900,837 ( + ) ;   340 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os02g0761000 Os02t0761000-01 J023041N10 205892 J023041N10 5304 LOC_Os02g52340.1 AK070121 3377 AP008208.2 255670529 BAF10107.1 113537724 NC_008395.2 297600179 NM_001054728.1 115448826 NP_001048193.1 115448827 Q9XJ66 MAD22_ORYSJ


Chromosome: 2 ,  position: 32,894,932 - 32,900,837 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gcgccgcgcc tcgcctcgcc tcgcctcacc tcacctcacc tcaccctccg cctcgtctcc 
000061 ttcccccctt tcctctaccc acgcacgccc tctctcccat cccagccgta gccgcgccgt 
000121 gacttgtctc gatcggcggc gaggaggagg gcttccgttc cctggccggt gggggaggat 
000181 caggcggggg ggcggcgggg agggggagga gatcggtctc ggtcgatccg cgcgcggcgg 
000241 cgatggcgcg ggagaggcgg gagataaaga ggatagagag cgcggcggcg cggcaggtca 
000301 ccttctccaa gcgccggcgc ggcctgttca agaaggccga ggagctctcc gtgctctgcg 
000361 acgccgacgt cgcgctcatc gtcttctcct ccacggggaa gctatcccac ttcgcaagct 
000421 ccaggtatgc tgttctactc ccacgcctgg atatctctcg actccgcttc gtctcccgcg 
000481 tttcgataga tctagctagg cgcgtttcct cccccggtct ccctttgact tcgatgtcta 
000541 agatccatcc gcctgggcta gggtttaaca cgggatattt taactagtaa cacggatctc 
000601 accatttcca cccgttcaga aaaatcaata cagttttaga acgactcgtg gttactttcg 
000661 ccccctttag atgtagggga tttactgtag tgtatgtagt ctgcacctgt acttttgcag 
000721 attattttcg aggtgttctt tttttggtgc atgagtagcc catcttattt ggccattcct 
000781 actggaaata tcgtacgaca actcctgtta tttgctgttt atgtgcgcgt ggagttaatc 
000841 gatgtgtgtg tcgcagtagt gctgtgttgg tgataaagct agctagctct gctgatagcc 
000901 tacggtcgta cgtgtgattt tatgtgctga tgcgtcgcgt tttaccctct gatcaatggg 
000961 gggtctcgtg ttttgtgcac ggaaaacctc gcttcctgtt gttgttttct tttgcaatgt 
001021 gttaaatcat tgcagaactg ttgtttgatg agaaatatcc tgttgttgtt ttcttttgca 
001081 atgtgttaaa tcattgcaga gctgttgttt gatgagaaat atcctgttgt tgttttcttt 
001141 tgcaatgtgt taaatcattg cagagctgtt gtttgatgag aaatatggta gtctcctaca 
001201 cgtatcgttc gtcatatcca tctcgcctta tttgaggaca atgctttcct cattgcaatc 
001261 ccttttctgc gccttaatta ggtattatac tgttatgctg tatcgctata tgtatttaca 
001321 tcgtgctgtt cagtcttgtt tgcagctgta caatatgagt ttgtttatga tatactcgcc 
001381 ctttaatttg ttactcatga taacaaactg aaataattta ctcatagatc tttatcttgc 
001441 atgtatccat ttcgaaaagt ttcctttgtc ttaataaaag aaatgttgta ctagtacata 
001501 tctcattata tcttcatgta cctgtccatc acttcatcgt cactatatat atatatatat 
001561 atatatatat atatatatat atatatatat atatatatat atatatatat atatatatat 
001621 atatatatat atatacaaac aaacaaaaat ggtgttagct agaattctct tttgctgaga 
001681 aagtatctta attattattt caggtttgtt aatttgcatc aatttataat accttaactt 
001741 cttttacttc aaacagggat tttgttaaac aattgcaatt tgttttatgt aaatttaagt 
001801 acatcatttt tcatttcttc gatgaatgta gattatctca gataagataa cctgatactt 
001861 cctttactct tctacatatg aatttgttta gttcatatca tatataaaag aatggacgga 
001921 gtatgttttt tatggtttta catcagttgt cagtagcaca acttaagcaa ggattcaact 
001981 tctcttgatg tactttttta gaaatgtgca catatacaac ttaatttcat ccatggtaca 
002041 atttattttt agttcatttc tacaaactag agttaagtgt tggaagaaga taaagaataa 
002101 actgggatgg ctggtactgt tatatgtgga caatcattca gccttggtag catttaaata 
002161 tgttcatttt acctggtagt gagtactggt agaatccata aatcgtgctt ctatcaataa 
002221 aaaatcacac tctataatat taattcaatt ttggagctgc aaggcttggt ttatctaaga 
002281 agttactatt tataaactaa catttgtctt gattatttgt tctacagctg gacaatgtat 
002341 tgatcctttc ttctacattt ggatgccata atatctgatt ttcttactgt tttctttttc 
002401 agtgcttaat tcctatattt ctgtcaatat caacttaccc gtgttaattt gaccagggaa 
002461 aaccactttc atttctcaag attactcctg caatgttata gacttgtagt ctacttggcc 
002521 cgtgccttta taattatgaa cattcatgta taatttatgt tctattttcg ttttatctga 
002581 tggtctgtgg cctactgtgg tattgatgat gccttctgtt ggacagtatg aatgaaatca 
002641 tcgacaagta caacacacat tctaataatc tggggaaagc agaacagcct tcgctcgact 
002701 tgaatgtatg tgaatcatct tatcatactg tgttaatagt aaatactgtt cttcatatat 
002761 attgcatctt aatgttgcct aactacatat agtagtatta gataatggtt caaaatgggt 
002821 cattttatgt ccatggcctt agggtggcac aatagcaaaa tattcatatt taggttttca 
002881 catctggtag cattatgatc ttatttctgt accctaaaat tttacaaatt aaacttaaaa 
002941 aaacaatcgc atatgtggat cctttcaaag ttctcagtat gctctaatga tgtctgtttt 
003001 gttggttgtg tgttaaatat gtaaattatt tgttttaatt ttttgttgct ggattttttt 
003061 taaaaaaatt aatacttgca gaaacaattt acatctctca cttcctcata tttttggtga 
003121 tacactataa attaacatta ttaaataata tagttctcta tctttttcta ttgtatcttg 
003181 agaaaaattc cctggaatcg gtacactata gcacaatact aattctgttt tttcatggat 
003241 catgaactca aatttagtac tgttagtagt aattagtgct caggcatgat gtaataggtg 
003301 ccttaaactt atgcagatat attttctaaa tgctacttat gcagatagtt aatactaaca 
003361 gttcaatctt ttcttttcag ttagaacata gcaagtatgc acatttgaat gagcaacttg 
003421 cggaagctag tctccggctt aggtcagttc ttttaacctt ttttttttaa aaaaaatgtt 
003481 atacttgagg catttgttct cagatccttt attcttgagg catttattct caaatgtata 
003541 tcattggtac atgaacaaat tgtagacaaa tgagaggtga ggagcttgag ggattgagca 
003601 ttgatgaact ccagcagcta gagaagaacc tggaagctgg tctgcacagg gtgatgctga 
003661 caaaggtttg gtgatcatca cccagactca tcacgtagct cgtactatga acaacttatt 
003721 gattgctata tgattttgca ggatcaacaa tttatggagc agatcagtga actccagcgg 
003781 aaggtaccac ctgttgctag attaaccctg aatcatcaat gtagcttggc aacatataat 
003841 ttgttttttc ttgcaaaagt agaaccttta aagaagactg tgttgcatac aagtatccgt 
003901 tgctggctta tttgtagttc attctttcca atacatcact gtgtaaaaag ttgatttata 
003961 gttctctcca atacagagtg aaatcactta taattttact gttgcatctt gcatgactaa 
004021 tatatgctgc caccttctgc cttttcttgc aagatggcac atgcatctgt tcaagcaaat 
004081 ttactaaatc atcaccaccc tggccttttc cccatggatg agtcggaatt ttggactaaa 
004141 ttccctgccc aacccttgga agtctgcggg ttttgttcat gccggaaaag tccttagcga 
004201 ttaaaaacaa tttcttctag tccttattgt ttcaatttta ccaaattata ttggcgtttt 
004261 aagtcatgtc ccttcttccc ccaaattgaa acattgattt tgactatctt gaagatcaaa 
004321 ttagagggta cccattggat aaaataacta atttaaatgg aaattgtact ttagtttttc 
004381 tgtcctgcat catttaccat ttgcccattt acatacattt aagtattgta gatgtttctt 
004441 gctgtgttgg aaactgatca aacagtacca tttcttggga aatgcaatct tatagttaaa 
004501 aaaagaatct acaatagatt ctaccgcatc caaaatgttc ttgtgcctgc ttgtttttat 
004561 tcaaaccctt accaattgaa ataagagaac attataatta tgtgttgcat actctctgtt 
004621 gcactgcaga gttcacagct ggcagaggag aacatgcaac tcagaaacca ggtataaatt 
004681 ttacttctgt aagctcttgg tttgttgagg acttaagacc agtccatctg aacacattcg 
004741 ttttcttggt actgaataca ggtatcccag atatcaccag ctgagaagca agttgttgat 
004801 actgaaaatt ttgttaccga aggacagtcc tctgaatctg tgatgactgc attgcattct 
004861 ggaagttcac agtcgcagga taatgatgat ggctcggatg tatccctgaa attagggtga 
004921 gtttctgatc actttgttta tgtgctgaag ttaaattcca attcaagttt caggaatatt 
004981 ggtcatatga ttatttggtt taatggattt taaggatgtg attggtgact ttaatcctta 
005041 gatgtattat catattatca acaggcaaga taatccattt atattattat taaactttat 
005101 tttgtataca tggatacaaa ttgtgtgtcg tgtttttctg ggtattgttt gagaccgagc 
005161 tatggccttt tgctaattct tattttctta taaatccaga tatgtgtacc tttttttaaa 
005221 aaagatacat gtatacttaa tacacatttg ataaatgctt tttttttctc ttccttaagc 
005281 tatactattt tatttcattc cgcatgtcct aatacttggc aaatgtagtt aagccacatt 
005341 tggttctcta attgcttatt ttctttttct taattaagct atactttgtt tcatgtccta 
005401 atacttgtca aatgtagtta agccacattt ggttctctga ttggtttgag aagaaggatg 
005461 gaatttgaat tcttgcctgg gggtgtactc aactacgttt gattacttgt atttgccctt 
005521 cagtattttg ttcatttcga tttttcttca actctacaat ttgcaggctg ccttgtggtg 
005581 catggaagta actgaaagga aaaaaaaagc atccttgcag atctggttgg agtcgttgcg 
005641 gcatccaggg gagaaacgct tgtgttattc ccaaacccag actgcaataa tataatcttg 
005701 cgttggaagc gagatcagtt aacctgattt atcatccttg tggctgcatg atgcgatgtt 
005761 ccgcttgtac tgttcgctag gatcttgact aaactttgag atctatgtgc cgtttaatta 
005821 tcccatcgct attggcactc cttatgcgat acatcatata tgcactttgt tgctatctta 
005881 attatgatgc gtcttttgca gcgttc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BY844790 bart11c06 539
more... (Total Hit Count: 15 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ926718 whchan30j13 551
more... (Total Hit Count: 99 )
/rice/oryzabase