cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK070026     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os02g0557200 ( IRGSP 1.0 )
RAP - Chromosome No. 2
RAP - Location, Length 21,925,188 -  21,930,972  ( + ) ;   5,785(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 21,925,188 -  21,925,539 ( + ) ;   352 (bp)
Exon 2 Location 21,926,314 -  21,926,429 ( + ) ;   116 (bp)
Exon 3 Location 21,926,653 -  21,926,748 ( + ) ;   96 (bp)
Exon 4 Location 21,926,880 -  21,926,936 ( + ) ;   57 (bp)
Exon 5 Location 21,927,151 -  21,927,303 ( + ) ;   153 (bp)
Exon 6 Location 21,927,405 -  21,927,489 ( + ) ;   85 (bp)
Exon 7 Location 21,927,653 -  21,927,743 ( + ) ;   91 (bp)
Exon 8 Location 21,927,882 -  21,928,046 ( + ) ;   165 (bp)
Exon 9 Location 21,928,399 -  21,928,518 ( + ) ;   120 (bp)
Exon 10 Location 21,928,610 -  21,928,685 ( + ) ;   76 (bp)
Exon 11 Location 21,928,851 -  21,929,022 ( + ) ;   172 (bp)
Exon 12 Location 21,929,178 -  21,929,653 ( + ) ;   476 (bp)
Exon 13 Location 21,929,734 -  21,929,924 ( + ) ;   191 (bp)
Exon 14 Location 21,930,015 -  21,930,972 ( + ) ;   958 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os02g0557200 Os02t0557200-01 J023036G16 205790 J023036G16 5215 LOC_Os02g35140.1 AK070026 3436 AP008208.2 255670529 BAF09051.1 113536668 NC_008395.2 297600179 NM_001053672.1 115446714 NP_001047137.1 115446715 Q6YVY0 ARFG_ORYSJ


Chromosome: 2 ,  position: 21,925,188 - 21,930,972 bp

   Now loading


#
#
Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 cctctctctc ttcctcttct ccccgcgcaa gccaaagcca cagccagcga aggcggcaag 
000061 ccaccaccac cacctcctcc tcacgccacc gcggcctcct cctccggcca ccgcgcgctc 
000121 acctcgggca gcggccgcag tggcgcgcgc tctccggtgt gggatctccg agtttttttt 
000181 ttcgttttcc ctctgaattc cgcggcgggg aggccggatc tgcggggagg ggcatggggt 
000241 gaccagatcg ggacgcgcac ctcgctctcc tcctcctcct cctcctgaat tcctctcgtc 
000301 gggatggctg gctccgtcgt tgctgctgct gccgccgccg gcggtggcac aggttcgtgt 
000361 cccgcgcttt ctcttcgcgt ttttcgcctc ggctggttgt gtgtgtgtgt gtgtgtgtgt 
000421 gtgtgtgtgt gtgtgtgtgt gtgtgtttgg tctgaattgg ggttgtgaag ttagctggtg 
000481 agtcgagtgc ttggtgagct agcaagagag agagagacgt ggacttgggg ggcagttgac 
000541 ttgttcgtct aggggggaga gagagagggg ttgttgtgtg gtgtggaatt ggttggaatt 
000601 cgaggcgact cggcattgtt taccataaaa agcgcctttt ctcttccatt tcttgtccaa 
000661 ttttgtcgtc ttgttttcct ttttaggtcg gagatttgtt cctgttgtgc tgattcgtgc 
000721 gaaaactcgt aattccgcta gtatggccac tgctctagta attctcttcg gatgcaagcg 
000781 aattccgatc tgtgaaatgg gggaaacaca tgtgcaatta cggatctgag aacctgtttt 
000841 gtagtgacag cgtctttgtt tctctctctt ttttttttga aaaaaaaatg gttaggttgg 
000901 caattggttc taccacagag acgcaaatga gaaaaatgtt ggatctatgt gtgtgctgct 
000961 tgtttagatt tacaattctg gagcaattat ggtgtagtta actcatgatc aacggttaat 
001021 tagacctttt tggttgccac catgacatga ggggaaattt cgcttgattt tgtatggtga 
001081 tgtttttatt ttcctaaaaa aagagagtaa aaattcctct gtgcagggag ctcttgcgat 
001141 gcgttgtaca gggagctatg gcatgcttgc gctgggccgt tggtcacagt gcctcgccaa 
001201 ggcgaattgg tttactactt cccccagggc catatggaac aggtaaatct cactataata 
001261 tatcaatgct tgcttgctct ctatcatgtc ctaaaattaa ggagtttgct actaatttgt 
001321 gccataagaa tgtcacttgt tccttgtgtt gacacacagc agtatggttt tgtttcttcg 
001381 gcaatgtagt tattttagta cgtctttcct ttgaactaat cttatgtctt tcctttgaac 
001441 tgatcttttc atgctttttc tatagcttga ggcatctaca gaccaacagc ttgaccagca 
001501 tctgcctttg tttaacctgc catctaagat cctctgcaaa gtggtcaatg tagaacttag 
001561 ggtaagcatt ttccttttct ggtctgcagt agtttcacgc tatatgaaag ttcctctgga 
001621 ttttctagca agagtattac ttgtgtacct ttcatcctgt agtttactca ccttttttcc 
001681 tctggtatgc aggctgaaac cgattcagat gaggtttatg ctcaaattat gctgcaacca 
001741 gaagcagatg tgagtatgct tttcttatat atttttcttc taaataatag ttgtcctttt 
001801 cagctcattt gagcttttta tcaagctgta atgtagtgat cttgctcatg tcatagtcct 
001861 ttctttcttc tgatcgtctt ctctcatatt ctcacataaa ttctattgcc ttggaatttt 
001921 atatgggtat gtacttattc attttccttt attctgttgt tagcaaaatg aactcaccag 
001981 cccaaaacct gagccacatg aacctgaaaa atgcaatgtc cattccttct gcaagacttt 
002041 gactgcttca gatacaagca cccatggtgg attttcagtt cttaggaggc atgcagaaga 
002101 atgtcttcct cccctggtta ggaccaaaaa tatttttaac tcccttcata tgcggataat 
002161 cacattggat atttgctatc tgtaacatct tctgtatgtg gtatggttta tctttaggac 
002221 atgactcaga atccaccatg gcaagagctt gtggctagag atctccatgg aaacgagtgg 
002281 catttccgtc acatctttcg aggtaagtta taggaagaac atagtaatag tgaatgtagt 
002341 tccttctgag cttccataat gaaagggctt ccccaaaaga aattggtggc atattagtaa 
002401 tgctttccat ggtgattttg ttactatgtc tcacaaaggg tccccccacc actcccttat 
002461 tttaggacaa cctaggaggc atctgcttac aactggctgg agtgtttttg ttagctcaaa 
002521 aagattagtt gccggtgacg cattcatctt tctgaggtat gcaggggaac atttggaagg 
002581 cttgaagcca tttaacacat tttgcttatt tgcgtttgtt tcctgggtct gcggagttca 
002641 ggatgaatat tctatatcac tattgctgtt gtaaatacgg tgttcatata acagaggtga 
002701 gaatggagag ctacgagttg gtgtcaggag gctcatgagg caactaaata acatgccatc 
002761 atcagtaata tcaagtcata gtatgcatct tggagtccta gcaactgcat cacatgctat 
002821 atccaccgga actctctttt ctgttttcta caaaccaagg tttgattctt ctaatcttat 
002881 cattgtacct aagttcttca ccaatgcttt atgtacctct agcattttct tatgtacaga 
002941 tgcaatgtac ttcgtaataa aatatgcatg atgttatctg atatcctgag atgattccct 
003001 ggatgcccat ttaaattttc acttatgata ttgctctgtt gagtgcttat agaattatat 
003061 gtaacttttc ctcacagaat tacattccat tttaggaata tatttttgtg tgagtttgtt 
003121 tgataggtct tatttatttt cttgtgctaa acatatgttg taccattaca ttctaataag 
003181 tcagtgtttg ttcatctaat ttgggtttca gaacaagtca gtctgagttt gttgtgagtg 
003241 ctaacaagta ccttgaagct aaaaacagca agatatctgt tggaatgagg tttaagatga 
003301 gattcgaggg cgatgaagct cctgaaagaa ggtaatttaa cgtctatttt ccatccactg 
003361 gtttttcatt ggttcaaaaa ttgtgtgggc acatctcata aatatttctt catggtttat 
003421 aggtttagtg gaacaattat tggtgttggg agcatgtcaa cgtctccatg ggcaaattct 
003481 gactggagat ctttgaaggt aattaagatt ttcaaatttg tgggcaggat gcccttcttc 
003541 ctctgcatct gctttctgga acatttgagg acatatgttt cttagaaaat gcctgcagtt 
003601 gtgttgtcat gttttctctt gtatatcttc cagaatcaca acccatgtgt tcaccactga 
003661 taggtccaat gggatgagcc ttctgtggtt cctcgtccag atagagtttc accatgggaa 
003721 ctagagccac ttgctgtgag taattcacag ccatcacctc agccaccggc aagaaataag 
003781 cgggctcggc ctcctgcttc gaattcaatt gctccagaac tacctccggt cttcggtatg 
003841 tttttactaa gatattgcta cagattgtgc ttctgcttta aggtgatagc tagtactgtt 
003901 ttagcaatag aaaccttgca gtgtactgct tgtctgtctc ttcaattgct gtctgctttg 
003961 catgtctaac ctcttctgtt cctaacttag gtttgtggaa atcttcagct gagtccacac 
004021 aaggcttctc attttcggga ctacagcgaa cacaggaact atatccttca agccccaatc 
004081 cgatcttctc aacatcatta aatgttggat tcagtacaaa gaatgagcca tctgctctaa 
004141 gcaacaagca tttttactgg ccaatgagag agacaagagc caactcttac tctgctagca 
004201 tcagcaaagt tccatctgaa aagaagcaag agcctagttc ggctggctgc agattgtttg 
004261 gaatcgagat aagctctgct gtggaagcta catctccact ggctgctgtt tctggtgttg 
004321 gtcaagacca accagctgcc tcagtagatg ctgagtctga tcagctctca caaccatcac 
004381 atgccaacaa atctgatgct ccagcggcaa gcagtgagcc atctcctcat gagactcaga 
004441 gtcggcaagt gaggagctgc accaaggtaa tgagggttat ttttgcttgc aatactcaat 
004501 atcctcttgt ggacagcgga gtaattaata attggtcttc ttgcaggtca tcatgcaagg 
004561 aatggcagtt ggaagggcag tggacctgac aaggctccat ggatatgatg atcttcgctg 
004621 caagttagaa gagatgtttg atatccaagg agagctctct gctagcctaa agaaatggaa 
004681 ggttgtttac acagatgatg aggatgatat gatgctggtt ggggatgacc cttggccgta 
004741 tgtaccctta tccctgttca attaattact tcattttttg aattccttga gccttaacta 
004801 attacatttc gattgttgcc actgcagtga attttgcagc atggtgaaaa ggatatacat 
004861 ctacacctac gaggaagcca agcaacttac tcccaagtcg aagctgccga tcattggcga 
004921 cgccatcaag ccaaacccaa acaaacaatc gcccgagtct gacatgcctc acagtgacct 
004981 ggacagcacc gcccccgtca ccgataagga ttgctgaatg ctacctggcc atatttccct 
005041 tcagtttttt ttttccatct tgggatgttg agcatggggg ccaatgccca tgatccttgg 
005101 gacttctaag agttatccgc tggttggttc gtgggcccga aggacaccgt ctgcatctac 
005161 catggttcat gcatcatgca tagctgcccc tggaccagtg tggatcccat gccaggaagg 
005221 atggctgggg aggcagcatt tccatcacct ggcattccct gcgtgattgg cccatccgtg 
005281 tttaattctg ctgtgtgggg gtagtaggag ccatggcatc ctttgtccag tgctcagttt 
005341 tggtaaagtg gtgactggtg gtagacctgc aagaacgggg cccgggcctc gccatctctc 
005401 gctgcaccag taaatagagt gtcaagcatt catgttcctt tcttcctgca atgcatgggg 
005461 tatcatcatc cgtagctaag catcagttct tctccccccc cccccccccc cttgcatcct 
005521 gttcgcagtt ccggtgccgc cactggagct gttcgtttta acccaccggc attccttctt 
005581 ttcttttttt ttaccgggtg gtgtttttgc tttcggaagt cggagcattt gctaagtttt 
005641 tttttcctac gctgtgcttt cctcctgctg aatgtacctg tgcttttcct cctcgtggaa 
005701 gccatccaaa tctatgacaa ttttctgtac tcacttacct gcatgtacat aggaatggaa 
005761 atggaactgg actgaactga acctg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs  
Acc. No. Clone Name Length
AK251666 FLbaf119n03 2720 view details
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ719968 whvd6d13 839
more... (Total Hit Count: 17 )
/rice/oryzabase