cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK062929     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os01g0812800 ( IRGSP 1.0 )
RAP - Chromosome No. 1
RAP - Location, Length 36,280,098 -  36,282,293  ( - );   2,196(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 36,280,098 -  36,280,378 ( - );   281 (bp)
Exon 2 Location 36,280,492 -  36,280,560 ( - );   69 (bp)
Exon 3 Location 36,280,717 -  36,280,818 ( - );   102 (bp)
Exon 4 Location 36,282,026 -  36,282,131 ( - );   106 (bp)
Exon 5 Location 36,282,238 -  36,282,293 ( - );   56 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No
KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
MSU ID cDNA
Accession No
RiceXPro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
Os01g0812800 Os01t0812800-01 001109A05 105900 001109A05 10204 LOC_Os01g59730.1 AK062929 27095 AP008207.2 255672756 BAF06509.1 113534126 NC_008394.4 297598437 NM_001051130.1 115440630 NP_001044595.1 115440631


Chromosome: 1 ,  position: 36,280,098 - 36,282,293 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 ccgccgccgc caccgacgcc gtcgccgacg atcccatggc tcccgttaag aagacggtgg 
000061 aaaacctaag cttttatttg gttttgaaag ttcttgctgt gtggctttgt ctcttggtgt 
000121 gggcgtttga tcgatgggtg gggtgttcgc ggtgttttgc agaagaagaa cgcggagggg 
000181 atcaacaaca agctgcagct ggtgatgaag agcggcaagt acaccctcgg ctacaagacc 
000241 gtcctcaaga ccctccgcaa ctccaaaggt agctctttga ttcgtttcct agtcaccgct 
000301 ctagcttcat tcgttcatca gtcaagcctg gtacatatag tgtgataaat ctaaatcatt 
000361 tggaattggg ggtggggtgg ggggctgtaa attttcgggg aacacatctt attatgttat 
000421 attccagagt atagcatgga tcttgggcag ttttgccatg acagaaagtt gccctctgtc 
000481 gtttggatgt tgtcattttt actcatgtgg atgtcagaat gggactggag tttggctctt 
000541 cggcttgccc tttttgtgtc ttagagatga atgcagcgcc caacaacaat tcatctttcc 
000601 ttgctggtgt tctccttgat caagtctagg ggactaagtg agattgaaac atttactgcg 
000661 tcactgactc accgttgctt gtatgcgcat cactagttgt ttctactata acttacaata 
000721 atgtaaatgt cctcagttga gagaactttt gtcagccgta tagtaatttt tagcatggta 
000781 attcatgaaa taaaactgca ggctttttca ttttataaca agtttatcca atcagacatg 
000841 ttcaggtgat taggatgcta ttgccatgtt tgtatgattg tccacggtga agttgctagt 
000901 tggcacaagg gactgaagtt tggccctttg gctttccttt ctcagcctta gggatgaatg 
000961 cagtacccaa cagcaatata gtttcttttc cttacataaa tttccagaca ctcccttgtt 
001021 atctgggaaa gtaaggagct gaaacatttt gtcttacctt tttacataga tatttgatgt 
001081 ggtcagttca tgcgttttct tatgttattt ctatgagtta aaatcgtcct atttccagtt 
001141 tatgattacc ttgctgtttt ttttgtagtg ggcagtaggt gtttaatttt cacaactata 
001201 tctttatctg gggaattcat gcatcttgaa agactgttac ttctgtgaat gatatacagt 
001261 cttgcttctg gtcaccatga ttgtgttgca aggaattaat cattaaagtg ttcatcatta 
001321 tggtgctata cgaatctacc tttttcacca tggaatttct cttccaatgc ttagtagaaa 
001381 tttctatatc agcttattca tcaatgtgct accttcttga taccctgttt atccattggg 
001441 tcctgatact ttcacgatct gttttgaatc ttcagggaag ctagttatcg ttgcaaacaa 
001501 ctgccctcca cttaggaagt ctgaaattga gtactatgct atgctgggaa aagttagtgt 
001561 gtatcacttc aatggaagta agattactct tcattcactg aaccacacat gatagctgca 
001621 aggctttctt ttttgcatta atttatgcct gtgcatgcat tagcctgttt ataatttgat 
001681 tcgtcaattt caacctctca aataggctaa ccgttatgtg ttggttaatt cagacaatgt 
001741 tgatcttggc actgcctgcg gcaagtacta ccgagtgtgc tgtctcagtg tcgtcgatcc 
001801 tggttagttt cagtgacttc aatctttgaa cctttccttc cgcatccata tgaactctcc 
001861 atttccgttc tttttttcat ttgaaaacac caataatgct tctcttgtaa tccaggtgac 
001921 tcggatatta ccaagcaatt acctgagagt cattgatgtg catgcattgg ccttgtgacc 
001981 gatcttatct tcactttttg ctcacatgaa aaagatatat atcttcatac ggtgttcttg 
002041 tgaagttgcg atacattgat gaaccaaacc tggcacactt caatagcatc gcctagtttt 
002101 gctctgctaa gcatctgtca acggtaaagg taggagtgaa atgtatgtag gatttggagg 
002161 taatgggaaa taaatggtgc aatctgtttt actttc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK251103 FLbaf105d18 587
more... (Total Hit Count: 19 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ813960 whsct21j23 519
more... (Total Hit Count: 478 )
/rice/oryzabase